gitlab.inria.fr / pvignet/cadbiom / commits
Cadbiom is an open source modeling software. Based on Guarded transition semantic, it gives a formal framework to help the modeling of biological systems such as cell signaling network.
| SHA | Message | Author | Date | Stats |
|---|---|---|---|---|
| ffcfe214 | [cmd] Fix small typo in doc | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 0be636fc | [lib] Add bdist wheel directive | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 8c286050 | [lib] Add sphinx requirement | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| aa819c5a | [doc] Fix typos/add titles | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 90aa4741 | [doc] Fix main sphinx warnings... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| a77fad40 | [lib] Fix typos | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| ad09a94a | [lib] CLU: black | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 66bb264a | [lib] CLU: Fix typos | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 9ddd9ce9 | [lib] CLU: Fix bug n°2: incorrect shifting of variant constraints due to wron... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 08520ef5 | [lib] CLU: Fix bug: incorrect shifting of variant constraints due to referenc... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 2343f2e0 | [lib] MCLQuery: Add variant_prop arg in the constructor | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| e383298a | [lib] CLU: add extra test on invariant constraints shifting | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| dd39e021 | [lib] CLU: Test variant constraints from text/DIMACS properties | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| fad1c384 | [lib] MCLQuery: add doc ex | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 562804a1 | [lib] Simulator: Fix error when a file with multiple solutions is loaded | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 697d7d49 | [gui] Add 1 tooltip on 'load file' button of simulator | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 66dd2c05 | [gui][lib] Simulator: Fix typos; add few doc | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| a1370fed | [lib] MCLQuery: fix typos | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 7cf64feb | [lib] CLU: Try to fix __shift_variant; Still not tested... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 0d7ab86f | [lib] CLU: Add warning + TODO on __shift_variant() that seems to be erroneous | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 19124866 | [lib] CLU: add warnings about not using check_query flag | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| d8f10936 | Increment packages and libraries versions | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| df85c526 | [lib] CLU: fix typos | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 3111de04 | [lib] CLU: add doc; fix typos | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 4bf9466f | [lib] CLU: add todo | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 83c5ff66 | [lib] CLU: Fix typos | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 35bdef62 | [lib] Fix collisions between literals in start/inv properties and no frontier... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 83486da0 | [lib] MCLA fix typo | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| c7a6cb1b | [lib] CLUnfolder: Fix typos | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 4b04022f | [lib] Test: remove temp file during tear down | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| c895b7a4 | [doc] Keep only main contributors | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 3c1a18ce | Fix license issues: contrib; date; address; team | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 826c1744 | [lib] Remove info module | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| d7d962d4 | [lib] Fix duplication of transition during export of a model with macro node;... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 469731df | [lib] Tests: black | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| cff62b3c | [lib] Tests: Export/Import of models with MacroNode; Check order of xml attri... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| c03674b0 | [lib] Tests: CLU: black | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| cdac13c0 | [lib] Tests: CLU: fix typos | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| e2d0fcea | [lib] Tests: CLU: Cover the new functionality that prune initial constraints ... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| fd74ede3 | [lib] Refactor for helper func => classmethod of Clause | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| be601afa | [lib] MCLTranslator: black | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| b0a3e6fc | [lib] Tests: MCLTranslator: Fix typos | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 7f4db566 | [lib] Tests: MCLTranslator: Fix obvious copy/paste | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 10e9c560 | [lib] Tests: MCLTranslator: Tests are now real tests that do something... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| f3310efc | [lib] Test: separation of sol2 text/dimacs => easier to debug | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| dfcc568b | [lib] Test: separation of sol1 text/dimacs => easier to debug | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 25bca7e8 | [lib] Tests: Fix typos; add doc | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| df3be842 | [lib] Tests: annotate dynamic_constraints | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 42c57f9f | [lib] CLU: Fix typos | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| d76de0f6 | [lib] CLU: check_query: Some fix and doc | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 734559d0 | [doc] Mask python code for barplot | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 0976dbcb | Add example of desktop file | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| df056cae | [doc] Document desktop file shortcut creation | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 4c966e1c | [gui] Ability to install a desktop file shortcut | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| a7bc33df | [lib] Require a recent version of pip | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 068fc238 | [lib] Compilation directive to prune useless linked libs | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 2b3d591b | Fix uninstall directive | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 1d77308f | Fix broken track ip | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 9bffa72e | [gui] Fix size of biosignal editor | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 6611a851 | [gui] Add favicon on windows... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 3dc3f855 | [gui] Add escape shortcut to Char simulator; controler; solutions window; notes | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 76fe47e4 | [gui] Fix typos; add doc | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| d569c8ce | [doc] Update perf overview image | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 601731b5 | [doc] tutorial: Fix typos | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 6a33b7b8 | [doc] Fix bad license... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 0f87f7aa | Mask pytest_cache folder | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| c33c6cf3 | [cmd] Rename module solution_repr to models: more consistent with the content | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 68329bef | [lib] MCLA: black | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 9bcc0045 | [lib] MCLA/CLU: Save some cycles when there is no more solution for a given s... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 1847f4f5 | [lib] MCLSolutions: black | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 1648c855 | [doc] Add query & model for perf example | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 69458bec | [doc] Add Memory benchmark to tuto | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| ca220174 | [lib] Add doc about sub_nodes in CTopNode | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| af81310b | [lib] Remove attrs hloc/wloc in CStartNode, CSimpleNode, CInputNode; Relative... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 6b476b81 | [lib] remove useless func | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| a1a81d25 | [gui] Please do not mask stacktraces of exceptions... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| bcd4532f | [lib] Fix bug in the reloading of MacroNodes | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| a2a5a7e0 | [lib] Fix typos | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| ed9ae21a | [doc] Add unit test requirement for contrib | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| cdcda2dd | [tests] Fix test after the refactor of XmlVisitor: delete optional empty fields | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 95b879a3 | [lib] XmlVisitor: Fix typos in doc | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 7485b1c7 | [lib] XmlVisitor: Add doc. Awesome | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 236a0e2e | [lib] XmlVisitor: Please do not reimplement sets in Python... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 978ce280 | [lib] XmlVisitor: Refactor this shit code... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 8c7f586c | [lib] XmlVisitor: fix types : str is mandatory | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| b78e6507 | [lib] XmlVisitor: first refactor; remove shit code | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| e2ad1a45 | [tests] Fix broken test; see more | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 93063634 | [test] Fix command line test: changes in API of get_transitions_from_model_file | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| cca016e3 | [lib] Add doc | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 3547375d | [gui] Increase number of displayed nodes in graph editor: 4000 | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 1507bf34 | [lib] get_frontier_scc() small refactor on ugly code... | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 7823a878 | [lib] Add doc/todo remarks in get_frontier_scc() | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 67c448dc | Makefile: Ability to clean sphinx dir | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| ed291e1e | [doc] Rename Command line usage section | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| a7009497 | [doc] Fix typos in the title of pages | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 63b80f12 | [doc] Fix dir | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 555d9cf0 | [doc] Add logo/favicon | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| d75c0a88 | [doc] Fix directories | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 0bd087a4 | [doc] Increase doc version | VIGNET Pierre <p****t@i****r> | over 6 years ago | |
| 4036926e | [doc] Add forgotten perfs overview illustration | VIGNET Pierre <p****t@i****r> | over 6 years ago |