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3bd13227
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update suffixsearch lib
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Olivier Sallou <o****u@i****r>
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about 6 years ago
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7f0fc38c
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update suffix search
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Olivier Sallou <o****u@i****r>
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about 6 years ago
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21cec5b1
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update suffixsearch version
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Olivier Sallou <o****u@i****r>
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about 6 years ago
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6fbdbd37
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feat(modules): refactor code to allow use of external logol modules
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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8c3b092f
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fix: issue with context variable if some vars are undefined Closes #11
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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2fa6badb
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fix: issue with context vars in case of undefined variable
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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d81e7d03
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feat: add fasta info to result, updates format of output file
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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444275af
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feature: support meta controls at model level (post-control), however all var...
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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7eda19a9
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fix: fix parameter passing between main models
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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960ab214
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feat: manage protein biostrings Closes #9
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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cec65265
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chore: remove unused params
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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584bdc27
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fix: update spacer and overlap for known vars Closes #8
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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e4d16d07
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fix: fix size range computation
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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b75900f6
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fix: different fixes and enhancements for size range search and add some tests
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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fbfe1db8
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add util function to zip files
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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bcfc244d
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fix(not): tests for *not* condition, Closes #2
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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1e74ea7d
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fix(suffixsearch): add lock on suffixsearch index call Closes #7
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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7dcd529c
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add ci
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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6f4fd604
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feat: add more checks on grammar
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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1c04441a
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[feature] Add checks for grammar
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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dcd7046b
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fix suffixsearch
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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2ec51cd3
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manage meta controls
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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0ed464a9
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fix multi model
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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5b7baca3
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add func to add user morphisms
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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d6895616
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remove unused properties
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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365a66e6
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fix morphism case when char is not defined, keep default
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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928ececf
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overlap test
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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40eb6c43
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more test
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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dea118ed
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add test
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
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d52c4a57
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remove unused once var
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
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15f56676
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remove comments, and fix index setup
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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478bc861
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add utils functions for testing
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
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4e60a1cb
|
more tests
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
|
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0b4b7b87
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add support for plugins
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
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bed3603b
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add license
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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672f8bed
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cleanup
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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d064709f
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fix set of model and var for cassie search
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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7c050502
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fix logger call
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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e7c27a91
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remove debug log
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Olivier Sallou <o****u@i****r>
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over 6 years ago
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2ba4d30d
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use suffixsearch lib
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
|
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8b2e6844
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integrate cassiopee
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
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b4b3f123
|
use zap for logging
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
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a064ef02
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fix fasta generation
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
|
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d1a14af8
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add fasta output
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
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1ee03ae8
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add readme
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
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19c38dcb
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add utils functions
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
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853a40e9
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make as a module and add util functions
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Olivier Sallou <o****u@i****r>
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over 6 years ago
|
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f9404341
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go module for logol2 library
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Olivier Sallou <o****u@i****r>
|
over 6 years ago
|
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