GitHub / uw-comphys/openccm / commits
OpenCCM is a CFD-based compartment modelling software package. It is primarily intended for convection dominated reactive flows which feature a weak or one-way coupling between the reactive species and the carrier fluid, i.e. the reaction does not substantially influence the fluid flow over the course of the simulation.
| SHA | Message | Author | Date | Stats |
|---|---|---|---|---|
| 461d0aac | merge Merge pull request #60 from Alex-Vasile/fix_merging |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
3 months ago | |
| 4225b98d | Fix merging | Alex Vasile <4****e@u****m> | 3 months ago | |
| 78f49941 | merge Merge pull request #59 from Alex-Vasile/no-flux-bc-fix |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
3 months ago | |
| ea6b5cd7 | Add validation to catch flow inversion | Alex Vasile <4****e@u****m> | 3 months ago | |
| 1a50a669 | Fix bug with removing no-flux-bc elements | Alex Vasile <4****e@u****m> | 3 months ago | |
| fc8ba521 | Add better diagnostics for optimization failure. | Alex Vasile <4****e@u****m> | 3 months ago | |
| 7dc72490 | merge Merge pull request #58 from Alex-Vasile/expand_to_3d_two_phase |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
5 months ago | |
| 7e8d6a93 | merge Merge pull request #57 from Alex-Vasile/dof-to-space-mapping |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
6 months ago | |
| 026e03ad | merge Merge pull request #56 from Alex-Vasile/new-merging |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
6 months ago | |
| 1c531161 | merge Merge pull request #55 from Alex-Vasile/closed-system-pfr |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
6 months ago | |
| 88932dea | Update README.md |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 47554463 | Update README.md |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 825c2370 | Create CITATION.cff |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 03c4f110 | Update paper.md |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| aa06f4a9 | merge Merge pull request #54 from kyleniemeyer/patch-1 |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| f6e46959 | Updates JOSS paper |
Kyle Niemeyer <k****r@f****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| c94dc765 | Update paper.md |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 0bf4ee0e | Update paper.md |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 0c809036 | Update paper.md |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| d8b71ae4 | Update setup.cfg |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 26fce11e | Update setup.cfg |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| a5732598 | merge Merge pull request #53 from philipcardiff/patch-1 |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| fa42adf2 | merge Merge branch 'main' into patch-1 |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| a26e37f1 | Update paper.md |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| a9368b3e | Update paper.md |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 0aa8f452 | Update paper.md |
Philip Cardiff <p****f@g****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 46967951 | fix closed_box to export in parallel properly | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 99900120 | FIX: Fixed _fix_domain_boundary_connection_ordering to work correctly with mu... | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| d64f3744 | NEW: Change load_and_prepare_bc_ic_and_rxn and create_boundary_conditions to... | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| dddb0e39 | NEW: Allow vtu output to be called multiple times for the same simulation, ap... | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| ca7698cf | FORMAT: Clarify how & why np.add.at is being used. | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| c82eb829 | FORMAT: Simplify Q_weight calculations | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 361dde8b | NEW: Each BC and RXN file is now named with a unique hash based on the config... | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 7870333c | NEW: Create a unique hash for each configparser | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 02803bfc | FIX: Move generated reaction and boundary condition files into the tmp folder. | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 647ca89a | Update draft-pdf.yml |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| c21f6392 | merge Merge pull request #52 from Alex-Vasile/test-asserts |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| aa10703a | merge Merge pull request #51 from Alex-Vasile/manuscript-touch-up |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 5cfa550b | NEW: Add explicit asserts for simple_reactor tests | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| aa69bd29 | FIX: Manuscript touchups | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| aa21786d | NEW: Extra, spatially varying, terms in reactions | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| f4e493ec | FORMAT: Documentation formatting | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 5ee8cfe9 | FORMAT: Simplify reshaping of data inside reaction function | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 964443f1 | FIX: Correctly check OpenFOAM caches results | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 1b20149c | FORMAT: Simplify reaction parsing | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 1256e278 | FORMAT: Rename [RATES] to [RATE CONSTANTS] | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 1009fb51 | NEW: Allow closed-form expressions for reaction rates. | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| e59deac9 | FIX: Add 'S' to list of reserved names (Sympy uses it) | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 09791c5a | FIX: Made specie names be case sensitive | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| e3cadc46 | NEW: Monod example | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| d8e29d19 | merge Merge pull request #48 from Alex-Vasile/documentation |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 4b0b31e4 | merge Merge pull request #50 from Alex-Vasile/entry-points |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 6579b316 | merge Merge pull request #49 from Alex-Vasile/example-explanation |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 51a79313 | merge Merge pull request #46 from Alex-Vasile/manuscript-changes |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| f9b9cf45 | NEW: Support reactions with no products or reactants. | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| ebb02e71 | NEW: Support 0th order reactions | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 2f72c122 | FORMAT: Update OpenCMP example to have pre-computed CFD results and improve i... | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| c130002b | FORMAT: Clarify instructions on how to run OpenFOAM example. | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 336d675a | FORMAT: Include config file info in manuscript | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 5c0fbb98 | merge Merge pull request #45 from Alex-Vasile/pytest-changes |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 4e380fc1 | FORMAT: Documentation | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 28854a80 | FIX: Update entry points and fix tests to work from entry point. | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| ed1f59d2 | FIX: Update default value in example config file | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 515b3b7d | FORMAT: Documentation for system_solvers module | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| c46f1df2 | FORMAT: Add installation instructions, interface documentation, and example d... | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| acaebc30 | FORMAT: Properly format the copyright notices at the top of files | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| b641211f | FORMAT: Documentation for postprocessing module | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| b0f0b468 | FORMAT: Documentation for io module | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 36579f68 | FORMAT: Documentation for entry_points.py | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 375386f2 | FORMAT: Documentation for run.py | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 601b7c33 | FORMAT: Documentation for config_functions module | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| c5147a2f | FORMAT: Documentation for compartmentalize module | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| ecd6e08c | FORMAT: Documentation for compartment_models module | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 2828dc01 | FORMAT: Documentation for mesh module | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 56dd815e | FORMAT: Document the main __init__.py | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 51fe6abf | merge Merge pull request #44 from Alex-Vasile/pipe_with_recirc_2d_issues |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 09cefe5b | FORMAT: Units, better formatting of equations, and specifying correct limitat... | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 7e709bbf | FIX: Update figure based on new config values | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 5e090fc8 | FIX: Update reaction figures | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| b1ee37f4 | FIX: Add reactions to OpenCMP example in separate config file | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| a37f7b26 | FORMAT: Manuscript touch-ups | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 0caa40c2 | FIX: Skip tests that require OpenCMP if it's not installed | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 2ab740b3 | FIX: Remove unneeded import | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 98bd9e62 | FIX: Auto generate OpenCMP data for pipe_with_recirc example for tests. | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| af576576 | FIX: Add run instructions | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 82a441ca | FIX: Change value in config files to avoid warnings | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 88224ec9 | FIX: Increased tolerance for warning the user about merging compartments. | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 71fbc36d | FIX: Off-by-one error in checks | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| a18be55d | FIX: re-include steady-state velocity profile for OpenFOAM example | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 92f7ea78 | FIX: Properly escaping "\" in OpenFOAM header template | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| ba857e81 | FIX: Change BC generation code to work with numpy 2.0 | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| eeddab83 | FORMAT: Cleanup unneeded extra line | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 61161948 | FIX: Cleanup unneeded imports | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 672653f9 | FIX: Change pipe_with_recirc analysis scripts to not crash if a previous run ... | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 66f10a92 | FIX: Round dot product to address floating-point rounding issues for arccos | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 8ba12aea | merge Merge pull request #38 from Alex-Vasile/joss_comments |
nasserma <n****r@u****a>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| d6ecc338 | NEW: Update OpenFOAM to match OpenCMP | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| b35072cd | NEW: Update OpenCMP example to recreate figure 4 | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 85558261 | FIX: Remove need for admin privileges for Windows | Alex Vasile <4****e@u****m> | almost 2 years ago | |
| 66b5866f | NEW: Output average direction of flow in compartments for OpenFOAM | Alex Vasile <4****e@u****m> | almost 2 years ago |