|
54457de1
|
bump x.y.z version to even y prior to creation of RELEASE_3_23 branch
|
A Wokaty <a****y@s****u>
|
4 months ago
|
|
|
7e523589
|
bump x.y.z version to odd y following creation of RELEASE_3_23 branch
|
A Wokaty <a****y@s****u>
|
4 months ago
|
|
|
270d88dd
|
bump x.y.z version to odd y following creation of RELEASE_3_22 branch
|
A Wokaty <a****y@s****u>
|
10 months ago
|
|
|
958023b0
|
bump x.y.z version to even y prior to creation of RELEASE_3_22 branch
|
A Wokaty <a****y@s****u>
|
10 months ago
|
|
|
cafa29d5
|
Fixed unit test for filtering variants by location
|
Robert Castelo <r****o@u****u>
|
11 months ago
|
|
|
2eedb2dd
|
VariantFiltering 1.45.2
|
Hervé Pagès <h****b@g****m>
|
about 1 year ago
|
|
|
afbd644b
|
VariantFiltering 1.45.1: Add Seqinfo to Imports
|
Hervé Pagès <h****b@g****m>
|
about 1 year ago
|
|
|
b610adf0
|
bump x.y.z version to even y prior to creation of RELEASE_3_21 branch
|
A Wokaty <a****y@s****u>
|
over 1 year ago
|
|
|
decddfc6
|
bump x.y.z version to odd y following creation of RELEASE_3_21 branch
|
A Wokaty <a****y@s****u>
|
over 1 year ago
|
|
|
7ff49ffd
|
Bump version
|
Robert Castelo <r****o@u****u>
|
over 1 year ago
|
|
|
d3bd1594
|
Fixed GHA workflow
|
Robert Castelo <r****o@u****u>
|
over 1 year ago
|
|
|
0836d246
|
Updated README.md and GHA workflow
|
Robert Castelo <r****o@u****u>
|
over 1 year ago
|
|
|
779427d4
|
bump x.y.z version to odd y following creation of RELEASE_3_20 branch
|
J Wokaty <j****y@s****u>
|
almost 2 years ago
|
|
|
33be3902
|
bump x.y.z version to even y prior to creation of RELEASE_3_20 branch
|
J Wokaty <j****y@s****u>
|
almost 2 years ago
|
|
|
a5b24ee7
|
Bugfix in the autosomalRecessiveHeterozygous() function
|
Robert Castelo <r****o@u****u>
|
almost 2 years ago
|
|
|
cf385757
|
Fixed bug in autosomalRecessiveHeterozygous and removed API legacy convenienc...
|
Robert Castelo <r****o@u****u>
|
almost 2 years ago
|
|
|
e32d0257
|
bump x.y.z version to odd y following creation of RELEASE_3_19 branch
|
J Wokaty <j****y@u****m>
|
over 2 years ago
|
|
|
4fd2f0fe
|
bump x.y.z version to even y prior to creation of RELEASE_3_19 branch
|
J Wokaty <j****y@u****m>
|
over 2 years ago
|
|
|
d2456b1a
|
Fixed warning in C code triggered by -Wformat-security
|
Robert Castelo <r****o@u****u>
|
over 2 years ago
|
|
|
fa37d53a
|
bump x.y.z version to even y prior to creation of RELEASE_3_18 branch
|
J Wokaty <j****y@s****u>
|
almost 3 years ago
|
|
|
3015ee26
|
bump x.y.z version to odd y following creation of RELEASE_3_18 branch
|
J Wokaty <j****y@s****u>
|
almost 3 years ago
|
|
|
d717c2df
|
Bugfix on the autosomalRecessiveHomozygous() function. Default values for age...
|
Robert Castelo <r****o@u****u>
|
about 3 years ago
|
|
|
e4f3be40
|
bump x.y.z version to odd y following creation of RELEASE_3_17 branch
|
J Wokaty <j****y@u****m>
|
over 3 years ago
|
|
|
2316babd
|
bump x.y.z version to even y prior to creation of RELEASE_3_17 branch
|
J Wokaty <j****y@u****m>
|
over 3 years ago
|
|
|
da15bfad
|
Various fixes to remove warnings
|
Robert Castelo <r****o@u****u>
|
over 3 years ago
|
|
|
0a6a94d0
|
bump x.y.z version to even y prior to creation of RELEASE_3_16 branch
|
J Wokaty <j****y@s****u>
|
almost 4 years ago
|
|
|
7638b6fd
|
bump x.y.z version to odd y following creation of RELEASE_3_16 branch
|
J Wokaty <j****y@s****u>
|
almost 4 years ago
|
|
|
d9fa4dba
|
bump x.y.z version to odd y following creation of RELEASE_3_15 branch
|
Nitesh Turaga <n****a@g****m>
|
over 4 years ago
|
|
|
e5baf3d4
|
bump x.y.z version to even y prior to creation of RELEASE_3_15 branch
|
Nitesh Turaga <n****a@g****m>
|
over 4 years ago
|
|
|
a95fdc0f
|
bump x.y.z version to even y prior to creation of RELEASE_3_14 branch
|
Nitesh Turaga <n****a@g****m>
|
almost 5 years ago
|
|
|
a5893e3d
|
bump x.y.z version to odd y following creation of RELEASE_3_14 branch
|
Nitesh Turaga <n****a@g****m>
|
almost 5 years ago
|
|
|
a7b2d161
|
bump x.y.z version to even y prior to creation of RELEASE_3_13 branch
|
Nitesh Turaga <n****a@g****m>
|
over 5 years ago
|
|
|
633fbd58
|
bump x.y.z version to odd y following creation of RELEASE_3_13 branch
|
Nitesh Turaga <n****a@g****m>
|
over 5 years ago
|
|
|
6cbbb990
|
Fixed bug on the call to the exists() function.
|
Robert Castelo <r****o@u****u>
|
over 5 years ago
|
|
|
7ebb439e
|
Removing call to releaseName() on BSgenome objects and fixing a "first argume...
|
Robert Castelo <r****o@u****u>
|
over 5 years ago
|
|
|
3acde0eb
|
bump x.y.z version to even y prior to creation of RELEASE_3_12 branch
|
Nitesh Turaga <n****a@g****m>
|
almost 6 years ago
|
|
|
75cf4bec
|
bump x.y.z version to odd y following creation of RELEASE_3_12 branch
|
Nitesh Turaga <n****a@g****m>
|
almost 6 years ago
|
|
|
a65f78b3
|
Fixed interaction with GenomicScores and other small fixes.
|
Robert Castelo <r****o@u****u>
|
almost 6 years ago
|
|
|
1761ca6a
|
Replaced references to MafDb objects by GScores objects.
|
Robert Castelo <r****o@u****u>
|
almost 6 years ago
|
|
|
8f68a24c
|
merge
Merge remote-tracking branch 'upstream/master'
|
Robert Castelo <r****o@u****u>
|
almost 6 years ago
|
|
|
be810022
|
Fix call to gscoresCategory().
|
Robert Castelo <r****o@u****u>
|
almost 6 years ago
|
|
|
86f206cb
|
The values() generic and methods are defined in S4Vectors
|
Hervé Pagès <h****s@f****g>
|
about 6 years ago
|
|
|
e34f909d
|
Fixing the fact that providerVersion() does not handle BSgenome objects anymo...
|
Robert Castelo <r****o@u****u>
|
about 6 years ago
|
|
|
4a6c0722
|
bump x.y.z version to even y prior to creation of RELEASE_3_11 branch
|
Nitesh Turaga <n****a@g****m>
|
over 6 years ago
|
|
|
4f8e6a30
|
bump x.y.z version to odd y following creation of RELEASE_3_11 branch
|
Nitesh Turaga <n****a@g****m>
|
over 6 years ago
|
|
|
1085638b
|
Fixed R_CHECK_LENGTH_1_CONDITION problem.
|
[rcastelo] <[****o@u****]>
|
over 6 years ago
|
|
|
df17b33c
|
Bump version.
|
[rcastelo] <[****o@u****]>
|
over 6 years ago
|
|
|
bf210091
|
merge
Pushing bioc upstream changes.
|
[rcastelo] <[****o@u****]>
|
over 6 years ago
|
|
|
6e19b3e1
|
Fixed R_CHECK_LENGTH_1_CONDITION problem and some other bug.
|
[rcastelo] <[****o@u****]>
|
over 6 years ago
|
|
|
2cdc82da
|
bump x.y.z version to odd y after creation of RELEASE_3_10 branch
|
Nitesh Turaga <n****a@g****m>
|
almost 7 years ago
|
|
|
c7651478
|
bump x.y.z version to even y prior to creation of RELEASE_3_10 branch
|
Nitesh Turaga <n****a@g****m>
|
almost 7 years ago
|
|
|
f6d50abd
|
bump x.y.z versions to odd y after creation of RELEASE_3_9 branch
|
Nitesh Turaga <n****a@g****m>
|
over 7 years ago
|
|
|
cffc85dc
|
bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch
|
Nitesh Turaga <n****a@g****m>
|
over 7 years ago
|
|
|
b46d2942
|
bump x.y.z versions to odd y after creation of RELEASE_3_8 branch
|
vobencha <v****a@g****m>
|
almost 8 years ago
|
|
|
e2170230
|
bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch
|
vobencha <v****a@g****m>
|
almost 8 years ago
|
|
|
60040941
|
No more use of BiocInstaller (the package will be retired at some point)
|
Hervé Pagès <h****s@f****g>
|
almost 8 years ago
|
|
|
97935cb3
|
Replacing biocLite() by BiocManager::install().
|
[rcastelo] <[****o@u****]>
|
about 8 years ago
|
|
|
256bc706
|
merge
Merge branch 'paupuigdevall-modifications'
|
[rcastelo] <[****o@u****]>
|
about 8 years ago
|
|
|
1064e4bd
|
Replaced penetrance by phenocopies. Fixes in the documentation.
|
[rcastelo] <[****o@u****]>
|
about 8 years ago
|
|
|
d5cbc711
|
AgeOfOnset + intergenic variants inclusion in autosomalRecessiveHomozygous
|
paupuigdevall <p****1@e****u>
|
about 8 years ago
|
|
|
f471d7e7
|
bump x.y.z versions to odd y after creation of RELEASE_3_7 branch
|
vobencha <v****n@r****g>
|
over 8 years ago
|
|
|
f11bcad5
|
bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch
|
vobencha <v****n@r****g>
|
over 8 years ago
|
|
|
91a434ab
|
Several bugfixes and updated NEW file.
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
691d87b2
|
Bugfix for windows build.
|
Robert Castelo <r****o@u****u>
|
over 8 years ago
|
|
|
d3d247b1
|
Trying to spot the code that breaks the windows build.
|
Robert Castelo <r****o@u****u>
|
over 8 years ago
|
|
|
bed24235
|
Enable handling of multiallelic genotypes with autosomal dominant and recessi...
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
b6f6700c
|
Fixed NAMESPACE issues, removed warning from the change() replacement functio...
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
80532bf0
|
Fixed addition of functional filters.
|
Robert Castelo <r****o@u****u>
|
over 8 years ago
|
|
|
a4aab7a1
|
Fixing sorting assignments.
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
0655e855
|
Fixed annotateVariants() method for GScores object to handle alt alleles that...
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
663b62e9
|
Fixed unit test.
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
3877e6ab
|
Changes to adapt to the latest GenomicScores version.
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
78cd799c
|
merge
Merge branch 'JoanFernandez-twoFileApp'
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
05849fef
|
Two file app
|
JoanFernandez <j****1@g****m>
|
over 8 years ago
|
|
|
f0a1d63f
|
Two file app
|
JoanFernandez <j****1@g****m>
|
over 8 years ago
|
|
|
86fd3208
|
Updating shiny app.
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
9b33489f
|
merge
Merge branch 'JoanFernandez-oneFileApp'
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
aa0619f5
|
Fixed errors, added param functionality
|
JoanFernandez <j****1@g****m>
|
over 8 years ago
|
|
|
2f5b468d
|
fixed changes
|
JoanFernandez <j****1@g****m>
|
over 8 years ago
|
|
|
66be8b28
|
Fixed errors
|
JoanFernandez <j****1@g****m>
|
over 8 years ago
|
|
|
e0caeb30
|
New onefile app
|
JoanFernandez <j****1@g****m>
|
over 8 years ago
|
|
|
464671bd
|
Do not complain about input files without .vcf.bgz extension when they have ....
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
44f8f8a4
|
merge
Added functionality on selecting SO terms with shinyTree, although still need...
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
cb20a302
|
Fixed errors
|
JoanFernandez <j****1@g****m>
|
over 8 years ago
|
|
|
9d514e0c
|
Fixed namespace
|
JoanFernandez <j****1@g****m>
|
over 8 years ago
|
|
|
4aef14a0
|
SOterms tree generation and translation
|
JoanFernandez <j****1@g****m>
|
over 8 years ago
|
|
|
3e7c60a0
|
Updated argument vcfFilenames in variantFilteringParam() to vcfFilename. Adde...
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
2d0edceb
|
Fixed cutoff for SOterms so that when no SO term is given then no restriction...
|
Robert Castelo <r****o@u****u>
|
over 8 years ago
|
|
|
38690885
|
The path() generic has moved from Rsamtools to BiocGenerics. Import it
|
Hervé Pagès <h****s@f****g>
|
over 8 years ago
|
|
|
b83a4944
|
Fixing generic for sog()
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
bcf06a36
|
Adding the reverse argument to the sog() method.
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
0b8d9426
|
Fixed an issue with the change() method when the value is a character string ...
|
Robert Castelo <r****o@d****u>
|
over 8 years ago
|
|
|
2ac8238a
|
character-valued cutoffs may take now more than one character string.
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
b73ec351
|
Further method deprecation and simplification of the VariantFilteringResults ...
|
Robert Castelo <r****o@u****u>
|
over 8 years ago
|
|
|
9870e29d
|
merge
Merge branch 'JoanFernandez-SolveBranch' fixing the automatic datatables page...
|
Robert Castelo <r****o@u****u>
|
over 8 years ago
|
|
|
b64c3486
|
Automatic page observation
|
JoanFernandez <j****1@g****m>
|
over 8 years ago
|
|
|
9fa3d4f1
|
Automatic page observation
|
JoanFernandez <j****1@g****m>
|
over 8 years ago
|
|
|
de1e7484
|
Deprecating outdated filtering functions, updating accordingly the VariantFil...
|
Robert Castelo <r****o@u****u>
|
over 8 years ago
|
|
|
fd019097
|
Fixing DESCRIPTION.
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|
|
e4944741
|
Fixing DESCRIPTION.
|
[rcastelo] <[****o@u****]>
|
over 8 years ago
|
|