GitHub / nf-core/nascent / commits
| SHA | Message | Author | Date | Stats |
|---|---|---|---|---|
| 744a8fca | chore: Bump snapshot | Edmund Miller <e****r@g****m> | about 1 year ago | |
| 7d4fe619 | merge Merge pull request #185 from nf-core/dev |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 414bf0f7 | chore: Update release date | Edmund Miller <g****t@e****v> | over 1 year ago | |
| e90fbd17 | ci: Try to fixes runs on error with AWS iGenomes | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 5a32319f | chore: Bump a hash | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 1a0514f4 | ci: Switch to runs-on and use 5 shards | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 4bba323e | ci: Remove latest-everything on non-master | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 691211f0 | ci: Fix naming | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 852b5f04 | Template update for nf-core/tools version 3.2.1 |
nf-core-bot <c****e@n****e>
Committed by: Edmund Miller <g****t@e****v> |
over 1 year ago | |
| a76d25bd | chore: nf-core modules update gunzip | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 1cd72901 | chore: Bump gunzip version | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 31f35f73 |
chore: Update nf-test.config triggers and remove unused UTILS class
Co-authored-by: maxulysse <m****e@u****m> |
Edmund Miller <g****t@e****v> | over 1 year ago | |
| a012bf3e |
fix: Add changes from code-review
Co-authored-by: sateeshperi <s****i@u****m>, vagkaratzas <v****s@u****m> |
Edmund Miller <g****t@e****v> | over 1 year ago | |
| 63c1dbce | Template update for nf-core/tools version 3.2.0 |
nf-core-bot <c****e@n****e>
Committed by: Edmund Miller <g****t@e****v> |
over 1 year ago | |
| 84977cc9 | Template update for nf-core/tools version 3.1.2 |
nf-core-bot <c****e@n****e>
Committed by: Edmund Miller <g****t@e****v> |
over 1 year ago | |
| 7d9ce8a3 | chore: Bump fastq_align_hisat2 |
Edmund Miller <e****r@s****o>
Committed by: Edmund Miller <g****t@e****v> |
over 1 year ago | |
| d6afd86d | test: Ignore grohmm output | Edmund Miller <e****r@s****o> | over 1 year ago | |
| 83c2c8a0 | build: Lock down python version in PINTS | Edmund Miller <e****r@s****o> | over 1 year ago | |
| a9b12ce4 | style: Load pipeline-specific nf-core configs | Edmund Miller <e****r@s****o> | over 1 year ago | |
| 9fe1db20 | chore: Bump deeptools/bamcoverage | Edmund Miller <e****r@s****o> | over 1 year ago | |
| 7d33c659 | merge Merge pull request #184 from nf-core/2.3.0-release |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| d20685ad | chore: Bump version to 2.3.0 | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 0cb46013 | chore: Capture Template updates | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 1bda4994 | chore: Add new contributors section | Edmund Miller <g****t@e****v> | over 1 year ago | |
| ae6518e1 | merge Merge pull request #180 from nf-core/lsp-formatting |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| ba48eb2f | chore: Fix pipeline => nascent | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 74250432 | merge Merge pull request #173 from nf-core/fix-config-selectors |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 723e8730 | fix: Remove Transcriptome quant from STAR | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 2d19d953 | merge Merge pull request #177 from nf-core/homer-uniqmap |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 96a9f4d8 | chore: nf-core subworkflows update homer_groseq | Edmund Miller <g****t@e****v> | over 1 year ago | |
| bb5a3a80 | merge Merge pull request #182 from nf-core/nft-utils |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 3b9ee15a | test: That's why STAR is outputting samtools | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 6329b2cf | test: Fix ignore samtools | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 7a4e3560 | Template update for nf-core/tools version 3.1.1 |
nf-core-bot <c****e@n****e>
Committed by: Edmund Miller <g****t@e****v> |
over 1 year ago | |
| 6f6af11e | test: Maybe this was causing some deterministic issue | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 828cad24 | test: Remove Star logs | Edmund Miller <g****t@e****v> | over 1 year ago | |
| c85ed67c | test: Skip filtered beds and unpublish saf | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 6b4fbf5c | test: Ignore intersect.beds | Edmund Miller <g****t@e****v> | over 1 year ago | |
| d4ad53bf | test: Ignore MultiQC plots because of OSX ARM | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 72aa5f13 | ci: Hardcode total shards and bump nf-test | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 3c0ebaeb | test: Update unstable files | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 3d34f555 | test: Give up on Dragmap testing | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 2713cfcd | test: Remove plots | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 5404d649 | test: Skip bam checks | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 05f81e6c | test: Get more aggressive with the ignores | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 6403b85d | test: Convert all tests to nft-utils | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 5bff846b | test: Switch to nft-utils | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 2a7e7691 | chore: Bump nft-bam | Edmund Miller <g****t@e****v> | over 1 year ago | |
| c12ab1d8 | test: Use nft-utils removeNextflowVersion | Edmund Miller <g****t@e****v> | over 1 year ago | |
| bfcd97c0 | Template update for nf-core/tools version 3.1.0 |
nf-core-bot <c****e@n****e>
Committed by: Edmund Miller <g****t@e****v> |
over 1 year ago | |
| 0d1727b8 | merge Merge pull request #179 from nf-core/remove-lib |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 901f3e14 | chore: Remove old template | Edmund Miller <g****t@e****v> | over 1 year ago | |
| f071b81f | merge Merge pull request #178 from nf-core/grohmm-publishing |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 46964b28 | chore: Update changelog | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 1d1aae5e | refactor: Remove deprecated each channels | Edmund Miller <g****t@e****v> | over 1 year ago | |
| c9a38ed6 | fix(grohmm): Turn off publishing for parameter tuning | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 5b21392e | test(#57): Add uniqmap test | Edmund Miller <g****t@e****v> | over 1 year ago | |
| e1e7f920 | merge Merge pull request #175 from nf-core/homer-uniqmap |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 21376f38 | chore: Bump homer/groseq => homer_groseq | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 1af617e3 | fix: Update prefix if using uniqmap | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 739109a6 | chore: Remove second Fixed | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 9f5a2cc1 | chore: Update CHANGELOG | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 38b36b37 | style: Run prettier | Edmund Miller <g****t@e****v> | over 1 year ago | |
| b991a839 | docs: Add mention of Functional-Genomics-Lab/homer-uniqmap-nf | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 5f46a476 | docs(HOMER): Update HOMER documentation and turn off download by default | Edmund Miller <g****t@e****v> | over 1 year ago | |
| e15e0044 | chore(homer): Add other supported uniq-maps | Edmund Miller <g****t@e****v> | over 1 year ago | |
| a07d0ff4 | fix(homer): Set uniqmap to off by default | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 1231e940 | chore: nf-core modules patch homer/findpeaks | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 58a8977a | refactor: Move uniqmap generation to references | Edmund Miller <g****t@e****v> | over 1 year ago | |
| cb95feb1 | feat(homer): Add a hacky uniqmap download | Edmund Miller <g****t@e****v> | over 1 year ago | |
| e5d9d9f9 | fix(homer): Setup for a full run | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 1b006b37 | fix(homer): Flip the read_length and parallel_sequences | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 22463a31 | fix(homer): Split fasta | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 9c0487ab | feat(homer): Add uniqmap generation | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 210b2fc8 | merge Merge pull request #174 from nf-core/PINTS-scatter-gather |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 55861cd6 |
style: Updates from code-review
Co-authored-by: jfy133 <j****3@u****m> |
Edmund Miller <g****t@e****v> | over 1 year ago | |
| 136a9ca2 | fix(pints): Refactor to merge groups based on issue | Edmund Miller <g****t@e****v> | over 1 year ago | |
| dac91110 | test: flatten => toSortedList to make the order of beds consistant for snapshots | Edmund Miller <g****t@e****v> | over 1 year ago | |
| 8c5c2f8d | chore: Update changelog | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| fe259ca4 | chore: Specify arity for bams in PINTS | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| f075a6ca | refactor(PINTS): Use combine instead of each | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| bef9eef1 | refactor: Clean up the filters to run once | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| a3dc20fe | docs: Add PINTS docs | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| e6b3ecd1 | style: First pass with lsp | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| 0d654bf7 | fix: Skip chrM | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| 060aa75e | fix: Remove EBV | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| 708b73f9 | fix: Add chrUn to skip | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| 5bdce2ee | fixup! style(grohmm): Clean up | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| 29b003f2 | chore: Make notes of things to test | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| d74b4e86 | fix(pints): Use contains to filter out | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| bb65227b | merge Merge pull request #165 from nf-core/grohmm-overhaul |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| f68eb769 | fix(chm13): Skip _random fasta entries | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| 9c651138 | chore: Move test data to test-datasets repo | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| c0d27093 | chore: Fix config selectors | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| 204a6087 | fix: PINTS needs more resources | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| 5c6b24aa | style(grohmm): Clean up | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| af25b3fb | merge Merge pull request #171 from nf-core/hot-fixes |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| f84692e9 | merge Merge pull request #170 from nf-core/fix-forward-stranded |
Edmund Miller <2****r@u****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 5bc32ec6 | chore: nf-core modules update pints/caller | Edmund Miller <g****t@e****v> | almost 2 years ago | |
| 3dc061b0 | fix(pints): Avoid running on chrY | Edmund Miller <g****t@e****v> | almost 2 years ago |