GitHub / ncsu-landscape-dynamics/rpops / commits
PoPS (Pest or Pathogen Spread) R Package
| SHA | Message | Author | Date | Stats |
|---|---|---|---|---|
| 8b45272e | merge Merge pull request #214 from ncsu-landscape-dynamics/fix_config_update |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
10 days ago | |
| 749a748c | update pops_lite to have new parameters in pops_model | Chris Jones <c****8@g****m> | about 2 months ago | |
| 3dcf8852 | test fix for pops_lite | Chris Jones <c****8@g****m> | about 2 months ago | |
| b5ebec4d | update changelog with all changes since last update (#211) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
2 months ago | |
| 40414169 | Lite (#207) |
cyborginhas <6****s@u****m>
Committed by: GitHub <n****y@g****m> |
2 months ago | |
| b35ca039 | Use rounding for treatments (#203) |
Vaclav Petras <w****s@g****m>
Committed by: GitHub <n****y@g****m> |
3 months ago | |
| 4e1c9f67 | Round mortality (#210) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
3 months ago | |
| 13f8a8e2 | update pops-core | Chris Jones <c****8@g****m> | 4 months ago | |
| c95b0dad | Use rounding for mortality (#204) |
Vaclav Petras <w****s@g****m>
Committed by: GitHub <n****y@g****m> |
4 months ago | |
| 3f9265d3 | update rounding for overpopulations (#209) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
9 months ago | |
| 74b1480c | Use rounding in quarantine (#208) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
9 months ago | |
| 9354e1f5 | Use rounding for non-stochastic dispersers from cell (#205) |
Vaclav Petras <w****s@g****m>
Committed by: GitHub <n****y@g****m> |
9 months ago | |
| a2f71d43 | Update to PoPS Core with explicit casts (#206) |
Vaclav Petras <w****s@g****m>
Committed by: GitHub <n****y@g****m> |
9 months ago | |
| 38a19e30 | Pass multiple random seeds to pops-core (#202) |
Anna Petrasova <k****a@g****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 96b83ada | added na.rm =TRUE to any checks for raster data. (#201) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| f461cf28 | fix probablistic weather (#200) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 9aece1ce | Fix county level calibration (#198) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| a0c8c930 | Update README.md |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 575764e5 | Pull request to add in county level data for calibration and running the mode... |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| 7f565f0e | Updated pest_host_table_list to include susceptibility and mortality rate mea... |
cyborginhas <6****s@u****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| b70235a8 | Multi host2 (#188) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| ac1383a5 | Use multihost API with single host (#186) |
Anna Petrasova <k****a@g****m>
Committed by: GitHub <n****y@g****m> |
over 1 year ago | |
| ba7dd0bd | Remove raster, rgdal, sp packages from dependencies (#187) |
Anna Petrasova <k****a@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 9aabb09e | Fix write seeds (#184) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| bfb05a8e | simplify and fix creation of rasters within foreach loops (#182) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 5927e011 | R seeds write (#179) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 24c17de1 | Add soils (#178) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 9112192d | Update README.md |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 25a505fb | Update _pkgdown.yml |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 266d66a9 | Update _pkgdown.yml |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 65dbf1f8 | Update pkgdown.yml |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| e524e2c4 | Refactor (#173) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| a0f2680c | Update core (#168) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 21e0f5f6 | update versions (#166) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
about 2 years ago | |
| 5176c26d | update renv, r, and all packages (#165) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
about 2 years ago | |
| f1fcac81 | Add final_step as valid option in configuration checks (#163) |
Anna Petrasova <k****a@g****m>
Committed by: GitHub <n****y@g****m> |
about 2 years ago | |
| fc7b4630 | fix quarantine output in multirun (#162) |
Anna Petrasova <k****a@g****m>
Committed by: GitHub <n****y@g****m> |
over 2 years ago | |
| 72dd6f35 | update mcc with checks (#161) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 2 years ago | |
| 04c082f0 | Update packages (#159) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 2 years ago | |
| 3d277292 | Fixes 156 (#157) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 2 years ago | |
| a9de363f | Update CHANGELOG.md |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 3 years ago | |
| 3aee60b2 | fixed errors when using 2 layer raster with uncertainty = TRUE (#155) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 3 years ago | |
| 128027d8 | New cal metrics (#153) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 3 years ago | |
| 118d6c06 | Host and intitial condition uncertainty (#151) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 3 years ago | |
| a7255d1e | fixed calibration with multiple metrics so once one falls that proposal set i... |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 3 years ago | |
| c1f35ad6 | Update cal options (#150) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 3 years ago | |
| 8a2f00ad | Update pkgdown.yml |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 3 years ago | |
| 816ddac9 | Cal adjustment (#149) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 3 years ago | |
| afa9ce81 | Update CHANGELOG.md |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
about 3 years ago | |
| 3e34ad94 | remove check for the node being the same for an edge. Round trip. | ChrisJones687 <c****8@g****m> | about 3 years ago | |
| 4308133a | Update core (#147) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
about 3 years ago | |
| 8997c516 | Fix draw params (#146) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 3 years ago | |
| cf3af041 | Added Mathews Correlation Coefficient as a calibration statistic to use. (#145) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 3 years ago | |
| 825fbf4a | Update packages and match new terra naming (#144) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 3 years ago | |
| 2f8d8bd2 | Add calibrate tests (#143) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 3 years ago | |
| 5e408e2d | fix mcmc parameter order (#141) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 3 years ago | |
| 0475b393 | Cal network (#140) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 3 years ago | |
| d63be577 | Update R-CMD-check.yaml (#139) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 3 years ago | |
| 6a0eb458 | Update README.md (#138) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 3 years ago | |
| 50ea26fa | Update CHANGELOG.md |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 3 years ago | |
| fb6105c9 | Update to network version of PoPS Core (#131) |
Vaclav Petras <w****s@g****m>
Committed by: GitHub <n****y@g****m> |
over 3 years ago | |
| 82d01d2b | update | ChrisJones687 <c****8@g****m> | almost 4 years ago | |
| 62d91912 | make frequency and bool config to reduce # of parameters in pops.cpp by 14. (... |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| 527c712a | add pkgdown to suggests | ChrisJones687 <c****8@g****m> | almost 4 years ago | |
| 7ca4741e | Update CHANGELOG.md |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| 9807429e | Update README.md |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| a10336cc | Update pkgdown.yml |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| a81784a3 | update gitaction package down to use renv | ChrisJones687 <c****8@g****m> | almost 4 years ago | |
| 028b53fa | Add tests (#134) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| 12046cff | Write all (#133) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| 404ba9d7 | Update README.md |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| 9e0f9210 | Return error (#132) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| 85fdc87f | Auto select thresholds (#130) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| 8219f65c | Update docs (#129) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
about 4 years ago | |
| 656fefae | Add new metrics and point comparison option to validation (#124) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
about 4 years ago | |
| dde5dd8f | Main update (#123) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
about 4 years ago | |
| 21417ebb | Update README.md |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
about 4 years ago | |
| 9bd9c4fa | merge Merge branch 'master' of https://github.com/ncsu-landscape-dynamics/rpops | ChrisJones687 <c****8@g****m> | about 4 years ago | |
| b804b86b | switch min terra versin to 1.3-4 since 1.2-10 has breaking change in it. Upda... | ChrisJones687 <c****8@g****m> | about 4 years ago | |
| 38ed22ec | Update CHANGELOG.md |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
about 4 years ago | |
| b316d40c | updated to pops-core 1.1 (#122) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
about 4 years ago | |
| 77212720 | Multiple val outputs (#121) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
about 4 years ago | |
| 2669cfbd | fix incorrect default for mortality_frequency. | ChrisJones687 <c****8@g****m> | over 4 years ago | |
| 7fbcad60 | Update core (#118) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 41ffc172 | add theme | ChrisJones687 <c****8@g****m> | over 4 years ago | |
| c0b1f171 | update changelog | ChrisJones687 <c****8@g****m> | over 4 years ago | |
| 981036db | add changelog to navbar and format functions in reference | ChrisJones687 <c****8@g****m> | over 4 years ago | |
| 358546db | update description | ChrisJones687 <c****8@g****m> | over 4 years ago | |
| 6b1a1198 | add favicons | ChrisJones687 <c****8@g****m> | over 4 years ago | |
| 83ea5f8a | update description | ChrisJones687 <c****8@g****m> | over 4 years ago | |
| e929334e | use pkgdown to build site setup | ChrisJones687 <c****8@g****m> | over 4 years ago | |
| 25655c73 | add github workflow for pkgdown | ChrisJones687 <c****8@g****m> | over 4 years ago | |
| 3a0743ce | fixed tif saves in multirun (#114) |
nfkruska <n****a@n****u>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 5b12ef56 | Total host (#113) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| baf6554a | Host mask (#112) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 81c05cf5 | Save outputs (#111) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 006e5737 | Docs update (#109) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| d4d754c7 | updated config to match terra extract function (#106) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| da4fa02d | Doc update (#105) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| d876399f | Dispersal (#73) |
Chris Jones <c****8@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago |