GitHub / ihmwg/python-modelcif / commits
| SHA | Message | Author | Date | Stats |
|---|---|---|---|---|
| 3c142c51 | Note that isoform parameter is deprecated | Ben Webb <b****b@g****m> | 12 days ago | |
| 10857216 | Prepare for 1.8 release | Ben Webb <b****b@g****m> | 16 days ago | |
| 57065923 | flake8 fix | Ben Webb <b****b@g****m> | 16 days ago | |
| d0d9eeed | Require latest python-ihm | Ben Webb <b****b@g****m> | 16 days ago | |
| 8d460dcd | Add read/write support for branched entities | Ben Webb <b****b@g****m> | 16 days ago | |
| fbbb2e28 | Fix typos | Ben Webb <b****b@g****m> | about 1 month ago | |
| 0f4b30e7 |
Bump actions/setup-python from 6 to 7
Signed-off-by: dependabot[bot] <s****t@g****m> |
dependabot[bot] <4****]@u****m>
Committed by: Ben Webb <b****b@g****m> |
about 1 month ago | |
| eb4d0e1c |
Bump actions/checkout from 6 to 7
Signed-off-by: dependabot[bot] <s****t@g****m> |
dependabot[bot] <4****]@u****m>
Committed by: Ben Webb <b****b@g****m> |
2 months ago | |
| 99cc432f |
Bump codecov/codecov-action from 6 to 7 (#57)
Co-authored-by: dependabot[bot] <4****]@u****m> Signed-off-by: dependabot[bot] <s****t@g****m> |
dependabot[bot] <4****]@u****m>
Committed by: GitHub <n****y@g****m> |
3 months ago | |
| fa76d43d | Update tests to work with python-ihm 2.11 | Ben Webb <b****b@g****m> | 3 months ago | |
| 766583a6 |
Bump actions/checkout from 4 to 6
Signed-off-by: dependabot[bot] <s****t@g****m> |
dependabot[bot] <4****]@u****m>
Committed by: Ben Webb <b****b@g****m> |
5 months ago | |
| 95bf1e16 | Check for outdated Actions |
Ben Webb <b****b@g****m>
Committed by: GitHub <n****y@g****m> |
5 months ago | |
| a16f5dbb | Prepare for 1.7 release | Ben Webb <b****b@g****m> | 5 months ago | |
| 0c03a256 | Use latest Actions | Ben Webb <b****b@g****m> | 5 months ago | |
| 633b2488 | We should work with v1.4.9 of the dictionary | Ben Webb <b****b@g****m> | 5 months ago | |
| e38dcfad | 'python3' is more likely to work than 'python' | Ben Webb <b****b@g****m> | 5 months ago | |
| 2bb4cc40 | Require python-ihm 2.10 for SeqDif subclasses | Ben Webb <b****b@g****m> | 5 months ago | |
| a0ef7674 | Import new insertion/deletion subclasses | Ben Webb <b****b@g****m> | 5 months ago | |
| e3b3f41b | Account for struct_ref_seq_dif changes in python-ihm | Ben Webb <b****b@g****m> | 5 months ago | |
| fbbcb032 | Update to CodeQL v4 | Ben Webb <b****b@g****m> | 7 months ago | |
| 727e0084 | Build a wheel |
David Hotham <d****m@b****k>
Committed by: Ben Webb <b****b@g****m> |
9 months ago | |
| 7b964212 | Prepare for 1.6 release | Ben Webb <b****b@g****m> | 9 months ago | |
| a355e1b9 | Match latest ModelCIF dictionary | Ben Webb <b****b@g****m> | 9 months ago | |
| 1c045385 | Update to match latest AlphaFold DB | Ben Webb <b****b@g****m> | 9 months ago | |
| 950abd6d | Use Python 3-style super() | Ben Webb <b****b@g****m> | 10 months ago | |
| f3fadb67 | Test with Python 3.14 | Ben Webb <b****b@g****m> | 10 months ago | |
| 32d038a3 | Read dihedral QA metrics | Ben Webb <b****b@g****m> | 10 months ago | |
| 59d72ddb | Test new Dihedral class | Ben Webb <b****b@g****m> | 10 months ago | |
| 9364e95d | Use Python 3-style super() | Ben Webb <b****b@g****m> | 10 months ago | |
| 1d878716 | Add write support for dihedral QA metrics | Ben Webb <b****b@g****m> | 10 months ago | |
| ea634a1f | Add classes for new protcol step method types | Ben Webb <b****b@g****m> | 10 months ago | |
| 6e063a59 | Retire salilab.org email | Ben Webb <b****b@g****m> | 10 months ago | |
| cd9826eb | Match doc copyright to that of the whole project | Ben Webb <b****b@g****m> | 10 months ago | |
| 05201f67 | Retire @salilab.org email | Ben Webb <b****b@g****m> | 11 months ago | |
| 6c1927c8 | Use old-style license for maximum compatibility | Ben Webb <b****n@s****g> | 12 months ago | |
| d1542792 | Drop Python 3.7 build | Ben Webb <b****n@s****g> | 12 months ago | |
| f0ccf0e4 | Prepare for 1.5 release | Ben Webb <b****n@s****g> | 12 months ago | |
| c9cc0fbe | Read pdbx_poly_seq_scheme table | Ben Webb <b****n@s****g> | about 1 year ago | |
| 81b8fe83 | Handle pdbx_nonpoly_scheme table | Ben Webb <b****n@s****g> | about 1 year ago | |
| 79716f37 | Update pyproject.toml on new release | Ben Webb <b****n@s****g> | about 1 year ago | |
| 18f474af | Provide a pyproject.toml for modern pip | Ben Webb <b****n@s****g> | about 1 year ago | |
| 4f44c1f3 | Set is_primary for struct_ref TargetReferences | Ben Webb <b****n@s****g> | about 1 year ago | |
| a9c16d4a | Fix typo | Ben Webb <b****n@s****g> | about 1 year ago | |
| 31c28f8d | Fix typo | Ben Webb <b****n@s****g> | about 1 year ago | |
| 8aa27e0e | Prepare for 1.4 release | Ben Webb <b****n@s****g> | about 1 year ago | |
| 3fa60668 | Check read/write of real archive structures | Ben Webb <b****n@s****g> | about 1 year ago | |
| 3c3743b7 | Require python-ihm 2.6 or later | Ben Webb <b****n@s****g> | about 1 year ago | |
| 9e86f1d5 | Make sure Revision/DataUsage are read | Ben Webb <b****n@s****g> | about 1 year ago | |
| 717fad9e | Read/write Revision if supported by python-ihm | Ben Webb <b****n@s****g> | about 1 year ago | |
| b26e990c | Read/write DataUsage if supported by python-ihm | Ben Webb <b****n@s****g> | about 1 year ago | |
| de9ef78e | Allow for missing alignment score/identity | Ben Webb <b****n@s****g> | about 1 year ago | |
| 7cd9a97b | Read ma_template_non_poly.details, closes #48 | Ben Webb <b****n@s****g> | about 1 year ago | |
| 42a435af | Support all sequence identity denominators | Ben Webb <b****n@s****g> | about 1 year ago | |
| c73c1399 | Add support for all metric types | Ben Webb <b****n@s****g> | about 1 year ago | |
| 088fc684 | Allow for empty _ma_qa_metric.description | Ben Webb <b****n@s****g> | about 1 year ago | |
| e95710d5 | Add classes for all protocol step types, closes #44 | Ben Webb <b****n@s****g> | about 1 year ago | |
| ec2768e8 | Add classes for local alignments and MSAs, closes #43 | Ben Webb <b****n@s****g> | about 1 year ago | |
| 0f246b58 | Use pytest to run RPM tests in Fedora 42+ | Ben Webb <b****n@s****g> | over 1 year ago | |
| 0daba3d0 | We need python-ihm 2.2 with BinaryCIF fixes | Ben Webb <b****n@s****g> | over 1 year ago | |
| e4e28ca7 | We need python-ihm 2.1 with BinaryCIF fixes | Ben Webb <b****n@s****g> | over 1 year ago | |
| 25630a14 | Use new python-ihm typed data items | Ben Webb <b****n@s****g> | over 1 year ago | |
| 68560975 | Drop support for Python 2 | Ben Webb <b****n@s****g> | over 1 year ago | |
| f77cf584 | Link to new BinaryCIF repo | Ben Webb <b****n@s****g> | over 1 year ago | |
| 6f2403fe | Go back to nose for Appveyor | Ben Webb <b****n@s****g> | over 1 year ago | |
| 5f9df288 | Switch Appveyor to Python 3.13, pytest | Ben Webb <b****n@s****g> | over 1 year ago | |
| 1c0be3de | Update for 1.3 release | Ben Webb <b****n@s****g> | over 1 year ago | |
| 32e2024c | We should now match dictionary 1.4.7 | Ben Webb <b****n@s****g> | over 1 year ago | |
| a9ccec24 | Document missing class | Ben Webb <b****n@s****g> | over 1 year ago | |
| 3761df18 | Account for new data item | Ben Webb <b****n@s****g> | over 1 year ago | |
| 9874ae17 | Add recent changes | Ben Webb <b****n@s****g> | over 1 year ago | |
| 66d6fe0d | Tidy up docs | Ben Webb <b****n@s****g> | over 1 year ago | |
| 1946b02f | Support ma_target_ref_db_details.is_primary | Ben Webb <b****n@s****g> | over 1 year ago | |
| 0b797a99 | Check repr() of feature-based QA metric classes | Ben Webb <b****n@s****g> | over 1 year ago | |
| db9eb7fd | Read feature-based metrics from mmCIF | Ben Webb <b****n@s****g> | over 1 year ago | |
| 6dbb7d78 | Write feature-based metrics out to mmCIF | Ben Webb <b****n@s****g> | over 1 year ago | |
| 2b0ab4fe | Start adding support for QA metric features | Ben Webb <b****n@s****g> | over 1 year ago | |
| 30fc37a8 | Allow disabling write-time checks | Ben Webb <b****n@s****g> | over 1 year ago | |
| 82d2690e | Update copyright year | Ben Webb <b****n@s****g> | over 1 year ago | |
| 3bd30cb8 | Use new 'QA metrics' associated file type | Ben Webb <b****n@s****g> | over 1 year ago | |
| 43c0c62d | Only use ModelGroup.details if python-ihm supports it | Ben Webb <b****n@s****g> | over 1 year ago | |
| 65a7f803 | Use latest actions, test with Python 3.13 | Ben Webb <b****n@s****g> | over 1 year ago | |
| 8448c0b5 | Support new-style model group tables | Ben Webb <b****n@s****g> | over 1 year ago | |
| 18ecf020 | Point to merged dict in audit_conform, closes #40 | Ben Webb <b****n@s****g> | over 1 year ago | |
| b68638ac | Add support for non-deposited templates | Ben Webb <b****n@s****g> | over 1 year ago | |
| e92bb5b8 | Remove workaround for old python-ihm | Ben Webb <b****n@s****g> | almost 2 years ago | |
| 7774ef15 | Fix conda python-ihm version requirement | Ben Webb <b****n@s****g> | almost 2 years ago | |
| e313592a | Point to associated files example | Ben Webb <b****n@s****g> | almost 2 years ago | |
| 428834c5 | Fix typo | Ben Webb <b****n@s****g> | almost 2 years ago | |
| d518d4e5 | Remove unused import | Ben Webb <b****n@s****g> | almost 2 years ago | |
| 6fc4c030 | Link to issue | Ben Webb <b****n@s****g> | almost 2 years ago | |
| a4073352 | Update for 1.2 release | Ben Webb <b****n@s****g> | almost 2 years ago | |
| db3d521e | Require python-ihm 1.7 for add_to_system support | Ben Webb <b****n@s****g> | almost 2 years ago | |
| 186214cd | Update copyright year | Ben Webb <b****n@s****g> | almost 2 years ago | |
| 799d8202 | Add recent changes | Ben Webb <b****n@s****g> | almost 2 years ago | |
| c8207604 | Add doc for file_format | Ben Webb <b****n@s****g> | almost 2 years ago | |
| 7ae40b09 | Add citation | Ben Webb <b****n@s****g> | almost 2 years ago | |
| 05ae927e | Don't shadow filehandle | Ben Webb <b****n@s****g> | almost 2 years ago | |
| 018cfeac | Use canonical URL for ModelArchive | Ben Webb <b****n@s****g> | almost 2 years ago | |
| a38c028f | Fix typos | Ben Webb <b****n@s****g> | almost 2 years ago | |
| 6b547965 | Check spelling before new releases | Ben Webb <b****n@s****g> | almost 2 years ago |