GitHub / dataMaster-Kris/dStruct / commits
| SHA | Message | Author | Date | Stats |
|---|---|---|---|---|
| b3af24e9 | Add tidyverse to "Suggests" due to BioC build error |
dataMaster-Kris <k****y@u****u>
Committed by: GitHub <n****y@g****m> |
over 3 years ago | |
| c296967d | Update DESCRIPTION |
dataMaster-Kris <k****y@u****u>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| feef6a31 | Update README.md |
dataMaster-Kris <k****y@u****u>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 4d57f555 | Update README.md |
dataMaster-Kris <k****y@u****u>
Committed by: GitHub <n****y@g****m> |
about 5 years ago | |
| 00334007 | Declared namespace of all global variables after BiocCheck | dataMaster-Kris <k****y@u****u> | about 5 years ago | |
| 7cf40b60 | Declare namespace of all elements within scope of functions such as ggplot2, ... | dataMaster-Kris <k****y@u****u> | about 5 years ago | |
| 657f5127 | Polished documentation reflecting the switch to IRanges for some of the tasks | dataMaster-Kris <k****y@u****u> | about 5 years ago | |
| b87ca823 | Addressed Bioconductor reviewer comment 1. | dataMaster-Kris <k****y@u****u> | about 5 years ago | |
| 06d198fc | Addressed Bioconductor reviewer comments 3-4. | dataMaster-Kris <k****y@u****u> | about 5 years ago | |
| 1fbfd306 | Addressed Bioconductor reviewer comments 2, 5-7. | dataMaster-Kris <k****y@u****u> | about 5 years ago | |
| c35d6cef | Documentation for datasets | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 5eda1671 | merge Merge branch 'devel' | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| c33e1e6f | Added documentation for lai2019 and wan2014, increased tolerance for tests, b... | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 40dd0dc6 | Updated README | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 5f77867f | Regenerated the documentation files | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 9e0759f7 | Added examples to function documentation | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 9c352d3b | Removed call to class() function and added description of output from getRegions | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| eb8ef32e | Changed T/F to TRUE/FALSE. Required by BiocCheck | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| ed9a980a | Adding HTML of vignette | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 488a1476 | Update R version dependency based on BiocCheck | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| e5392dc7 | Rename data objects | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 95eb8bcc | suppress warnings | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 7061f245 | Changed all tests and code in vignette to single process, devtools build updates | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 0706d5ac | Updated README | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 02ff6101 | Delete unwanted license file | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 7b0094e7 | Delete unwanted project file | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| cf69ac4b | Delete unwanted hidden file | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 8cdc2b0a | Subset Lai et al. data to keep only a dozen or so transcripts, add other file... | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| b54a013d | Added unit tests and minor edits to the vignette | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 4db7a886 | Simplified with a definition of dScore | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 43278b58 | Updated object name for function component operating on vector input to the f... | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 91e220b8 | Updated to ensure both guided and de novo modes of dStructome return result t... | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 8488e8c9 | Results from dStruct.guided are now labeled as pval and del_d | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| b436ddaf | Rownames of result from dStructome in the guided mode were not series of inte... | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 6343e589 | dStruct now reports effect size for each tested region in addition to the p-v... | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| bb6f0f55 | Update references | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 63b17a6c | Updated vignette | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 9bd866ab | vignette in progress | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 6c15c2c3 | Vignette in progress | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 88024e9e | Corrections to references | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 6c90a56d | Added data documentation, vignette in progress | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| 4abe090b | Fix DESCRIPTION | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| d5ac6724 | Reorganized main code, added test data and vignette in progress | dataMaster-Kris <k****y@u****u> | over 5 years ago | |
| f22a1c87 | Update README.md |
dataMaster-Kris <k****y@u****u>
Committed by: GitHub <n****y@g****m> |
over 5 years ago | |
| fe020bb2 | Update README.md |
dataMaster-Kris <k****y@u****u>
Committed by: GitHub <n****y@g****m> |
over 5 years ago | |
| 6529148d | Update README.md |
AviranLab <s****n@u****u>
Committed by: GitHub <n****y@g****m> |
over 5 years ago | |
| 850bf522 | Clarified that user can change parameter values |
dataMaster-Kris <k****y@u****u>
Committed by: GitHub <n****y@g****m> |
almost 7 years ago | |
| cb922ef1 | Clarified that the examples use default values |
dataMaster-Kris <k****y@u****u>
Committed by: GitHub <n****y@g****m> |
almost 7 years ago | |
| 051f450c | Updated author info | dataMaster-Kris <k****y@u****u> | over 7 years ago | |
| f228def4 | Updated plot_dStructome to specify ggplot functions clearly. | dataMaster-Kris <k****y@u****u> | over 7 years ago | |
| 6f80d3cc | Create License |
AviranLab <s****n@u****u>
Committed by: GitHub <n****y@g****m> |
over 7 years ago | |
| 311ef77d | Updated README | dataMaster-Kris <k****y@u****u> | over 7 years ago | |
| bd85e9ec | Updated README | dataMaster-Kris <k****y@u****u> | over 7 years ago | |
| 8568df1d | Updated README | dataMaster-Kris <k****y@u****u> | over 7 years ago | |
| ba723cca | Updated README | dataMaster-Kris <k****y@u****u> | over 7 years ago | |
| faae7fe9 | Updated README, | dataMaster-Kris <k****y@u****u> | over 7 years ago | |
| edb74779 | Updated README, | dataMaster-Kris <k****y@u****u> | over 7 years ago | |
| 6ea90f0b | Updated README, | dataMaster-Kris <k****y@u****u> | over 7 years ago | |
| 1238ca0a | Deleted old manual. | dataMaster-Kris <k****y@u****u> | over 7 years ago | |
| 865c4b7a | Polished the function descriptions. | dataMaster-Kris <k****y@u****u> | over 7 years ago | |
| 1d534240 | Initial commit | dataMaster-Kris <k****y@u****u> | over 7 years ago | |
| 02e592ed | Initial commit |
AviranLab <s****n@u****u>
Committed by: GitHub <n****y@g****m> |
over 7 years ago |