commits

Implementation of the matrixStats API for sparse matrices

SHA	Message	Author	Date
172c63ee	bump x.y.z version to even y prior to creation of RELEASE_3_20 branch	J Wokaty <j**y@s**u>	almost 2 years ago
4a46ab45	bump x.y.z version to odd y following creation of RELEASE_3_20 branch	J Wokaty <j**y@s**u>	almost 2 years ago
da46dd6c	Update NEWS and bump version	const-ae <a**5@g**m>	about 2 years ago
4c0a4c82	Implement optimized code path for rowMeans2 if cols is provided	const-ae <a**5@g**m>	about 2 years ago
46ca7e8d	Update NEWS and bump version	const-ae <a**5@g**m>	about 2 years ago
4debeeb3	Implement optimized handling of rowSums2 if cols is an integer vector	const-ae <a**5@g**m>	about 2 years ago
896396f5	Fix handling of NA's in rowSums2 if cols is a boolean vector	const-ae <a**5@g**m>	about 2 years ago
2ad650c3	bump x.y.z version to even y prior to creation of RELEASE_3_19 branch	J Wokaty <j**y@u**m>	over 2 years ago
18cae8ff	bump x.y.z version to odd y following creation of RELEASE_3_19 branch	J Wokaty <j**y@u**m>	over 2 years ago
511322bb	Use verbose conversion as demanded by Matrix	const-ae <a**5@g**m>	over 2 years ago
27b26a96	Update NEWS and bump version	const-ae <a**5@g**m>	over 2 years ago
e63f438a	Update documentation	const-ae <a**5@g**m>	over 2 years ago
2d121851	Throw error if length(center) != ncol(x) in colVars and similar	const-ae <a**5@g**m>	over 2 years ago
2923a3bb	bump x.y.z version to even y prior to creation of RELEASE_3_18 branch	J Wokaty <j**y@s**u>	almost 3 years ago
70bad9b5	bump x.y.z version to odd y following creation of RELEASE_3_18 branch	J Wokaty <j**y@s**u>	almost 3 years ago
4c6e8142	Make rowSums2(x, cols = logical_vector) faster	const-ae <a**5@g**m>	about 3 years ago
9f328f14	Update NEWS	const-ae <a**5@g**m>	about 3 years ago
eaef5ae2	Add fast path for 'rowSums2(x, cols = logical_vec)'	const-ae <a**5@g**m>	about 3 years ago
fdcc3b38	Bump version	const-ae <a**5@g**m>	about 3 years ago
da92a82c	Removed test to please the Bioconductor build system	const-ae <a**5@g**m>	about 3 years ago
138a88a5	Bump version	const-ae <a**5@g**m>	about 3 years ago
54a49b13	Fix missing rownames	const-ae <a**5@g**m>	about 3 years ago
e3039ed0	Update documentation of colOrderStats	const-ae <a**5@g**m>	about 3 years ago
a6fc49ff	Bump version	const-ae <a**5@g**m>	about 3 years ago
39742577	Move 'useNames' argument of xxxOrderStats into correct place	const-ae <a**5@g**m>	about 3 years ago
d7c88642	merge Merge branch 'patch_3_17_for_matrixStats_1_0_0' into devel	const-ae <a**5@g**m>	about 3 years ago
3cf4025f	Replace `matrixStats` in tests with `MatrixGenerics`	const-ae <a**5@g**m>	about 3 years ago
dba7c124	merge Merge branch 'change_useNames_default' into devel	const-ae <a**5@g**m>	about 3 years ago
da36e23c	colQuantiles honors 'useNames = FALSE' (fixes #26)	const-ae <a**5@g**m>	about 3 years ago
61df7fd4	Remove outdated comment	const-ae <a**5@g**m>	over 3 years ago
5441917d	Set 'useNames = TRUE' following HenrikBengtsson/matrixStats/issues/232	const-ae <a**5@g**m>	over 3 years ago
fa0fb7b5	bump x.y.z version to odd y following creation of RELEASE_3_17 branch	J Wokaty <j**y@u**m>	over 3 years ago
054bf939	bump x.y.z version to even y prior to creation of RELEASE_3_17 branch	J Wokaty <j**y@u**m>	over 3 years ago
16fac0b6	Update docs	const-ae <a**5@g**m>	over 3 years ago
1c6f50f3	Change 'useNames = NA' to 'useNames = FALSE'	const-ae <a**5@g**m>	over 3 years ago
137d07e3	Bump version	const-ae <a**5@g**m>	over 3 years ago
b99c51f3	Make Bioconductor check for R 4.3 happy by removing logical colQuantile test	const-ae <a**5@g**m>	over 3 years ago
75d85ba2	bump x.y.z version to even y prior to creation of RELEASE_3_16 branch	J Wokaty <j**y@s**u>	almost 4 years ago
7d5c0900	bump x.y.z version to odd y following creation of RELEASE_3_16 branch	J Wokaty <j**y@s**u>	almost 4 years ago
180e5a7c	bump x.y.z version to odd y following creation of RELEASE_3_15 branch	Nitesh Turaga <n**a@g**m>	over 4 years ago
4f1e2213	bump x.y.z version to even y prior to creation of RELEASE_3_15 branch	Nitesh Turaga <n**a@g**m>	over 4 years ago
b09d6087	Add SystemRequirements: C++11 back to DESCRIPTION	const-ae <a**5@g**m>	almost 5 years ago
78627a84	bump x.y.z version to even y prior to creation of RELEASE_3_14 branch	Nitesh Turaga <n**a@g**m>	almost 5 years ago
298de3db	bump x.y.z version to odd y following creation of RELEASE_3_14 branch	Nitesh Turaga <n**a@g**m>	almost 5 years ago
86e60847	Use std::log(int) instead of log(int) to support Solaris	const-ae <a**5@g**m>	almost 5 years ago
92a7a1d6	Work around for bug in testthat until it is fixed there	const-ae <a**5@g**m>	almost 5 years ago
66532d94	merge Merge branch 'PeteHaitch-master'	const-ae <a**5@g**m>	about 5 years ago
6eeaa6a8	Version bump	Peter Hickey <p**y@g**m>	about 5 years ago
98280844	`devtools::document()`	Peter Hickey <p**y@g**m>	about 5 years ago
ed73ffe9	Update NEWS and bump version	const-ae <a**5@g**m>	about 5 years ago
15193344	Add support for different quantile algorithms to rowQuantiles	const-ae <a**5@g**m>	about 5 years ago
a438384d	Bump version and update NEWS	const-ae <a**5@g**m>	about 5 years ago
eaab6741	Add useNames argument	const-ae <a**5@g**m>	about 5 years ago
83bfa3b6	Update documentation	const-ae <a**5@g**m>	about 5 years ago
a527ec55	Remove (hopefully) superfluous ellipsis from [col\|row]Prods	const-ae <a**5@g**m>	about 5 years ago
b29b2571	Set explicit R version in R-CMD-check-XXX.yaml	const-ae <a**5@g**m>	about 5 years ago
f2cd13d1	bump x.y.z version to odd y following creation of RELEASE_3_13 branch	Nitesh Turaga <n**a@g**m>	over 5 years ago
6d370b54	bump x.y.z version to even y prior to creation of RELEASE_3_13 branch	Nitesh Turaga <n**a@g**m>	over 5 years ago
90b8847e	Bump version and update NEWS	const-ae <a**5@g**m>	over 5 years ago
4e1bcae4	Fix bug if sparse matrix still contained explicit zeros	const-ae <a**5@g**m>	over 5 years ago
adda1606	Bump version and update NEWS	const-ae <a**5@g**m>	over 5 years ago
2a5d602d	merge Merge pull request #19 from const-ae/remove_cpp14_features	Constantin <c**e@um> Committed by: GitHub <ny@g**m>	over 5 years ago
744adbe0	Avoid C++14 features	const-ae <a**5@g**m>	over 5 years ago
4e710330	Bump version and update NEWS	const-ae <a**5@g**m>	over 5 years ago
836ceceb	Make sparseMatrixStats compatible with matrixStats v0.58.0	const-ae <a**5@g**m>	over 5 years ago
ff9c234f	Bump version	const-ae <a**5@g**m>	over 5 years ago
ce27b7ac	Update documentation	const-ae <a**5@g**m>	over 5 years ago
90d8ac6b	Bump version	const-ae <a**5@g**m>	over 5 years ago
49af1468	[CI] Specify default branch for CRON job	const-ae <a**5@g**m>	over 5 years ago
3b908bcb	Fix typo in README	const-ae <a**5@g**m>	over 5 years ago
74afdc2d	[CI] Update Installation instruction for MatrixGenerics	const-ae <a**5@g**m>	over 5 years ago
bcb784ac	Mainly revert 4c4a85	const-ae <a**5@g**m>	over 5 years ago
1db2e8ec	[CI] Adapt name of Job	const-ae <a**5@g**m>	over 5 years ago
0ccb581e	Fix further whitespace error	const-ae <a**5@g**m>	over 5 years ago
d7f97e79	[CI] Fix whitespace error	const-ae <a**5@g**m>	over 5 years ago
69caf247	[CI] Split up tests into release and devel	const-ae <a**5@g**m>	over 5 years ago
9bee8bcc	[CI] Add suggested packages	const-ae <a**5@g**m>	over 5 years ago
847acc6e	[CI] Add sessioninfo and rcmdcheck dependency	const-ae <a**5@g**m>	over 5 years ago
e494009a	[CI] Rewrite Github actions script	const-ae <a**5@g**m>	over 5 years ago
b021e481	Bump version and update NEWS	const-ae <a**5@g**m>	over 5 years ago
76c010df	Add section about installation problems at end of README	const-ae <a**5@g**m>	over 5 years ago
b4e45322	Also fix issue in calculate_sparse_rank	const-ae <a**5@g**m>	over 5 years ago
83a1cf12	Make sure to return NA_INTEGER when appropriate	const-ae <a**5@g**m>	over 5 years ago
4c4a85f5	Fix bug related to na.rm in colAvgsPerRowSet	const-ae <a**5@g**m>	over 5 years ago
18945d2e	Bug in matrixStats::colCollapse was fixed, include tests again	const-ae <a**5@g**m>	over 5 years ago
e3cb2f11	Bump version and update NEWS	const-ae <a**5@g**m>	over 5 years ago
9e15a25a	Support center in Mads	const-ae <a**5@g**m>	over 5 years ago
a2b4f942	Support center argument in [col\|row][Vars\|Sds]	const-ae <a**5@g**m>	over 5 years ago
1cb6d237	Remove names in row-function tests as well	const-ae <a**5@g**m>	over 5 years ago
1a267205	Bump version	const-ae <a**5@g**m>	almost 6 years ago
d846bba1	Remove test with named matrix	const-ae <a**5@g**m>	almost 6 years ago
f12b6092	Rename quantile_sparse_impl function	const-ae <a**5@g**m>	almost 6 years ago
8ebd7e00	merge Merge pull request #15 from mr-c/patch-1	Constantin <c**e@um> Committed by: GitHub <ny@g**m>	almost 6 years ago
c92f3aac	DESCRIPTION: add links to GitHub	Michael R. Crusoe <1**c@um> Committed by: GitHub <ny@g**m>	almost 6 years ago
0fcb1896	bump x.y.z version to even y prior to creation of RELEASE_3_12 branch	Nitesh Turaga <n**a@g**m>	almost 6 years ago
fdd45af4	bump x.y.z version to odd y following creation of RELEASE_3_12 branch	Nitesh Turaga <n**a@g**m>	almost 6 years ago
3356de51	Bump version and NEWS	const-ae <a**5@g**m>	almost 6 years ago
b1e6388b	Fix some problems around colQuantiles and the appropriate return type	const-ae <a**5@g**m>	almost 6 years ago
dcbae307	Drop matrix attribute in colQuantiles if length(prob) == 1	const-ae <a**5@g**m>	almost 6 years ago
f3092676	Support different types in colQuantiles	const-ae <a**5@g**m>	almost 6 years ago

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