GitHub / biojava/biojava / commits
| SHA | Message | Author | Date | Stats |
|---|---|---|---|---|
| 51f48cd5 | Updating after release | josemduarte <j****e@g****m> | 2 months ago | |
| 006e5eff | [maven-release-plugin] prepare for next development iteration | josemduarte <j****e@g****m> | 2 months ago | |
| f55940c0 | [maven-release-plugin] prepare release biojava-7.2.4 | josemduarte <j****e@g****m> | 2 months ago | |
| 8edaed75 | merge Merge pull request #1120 from biojava/sym-edgecase |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
2 months ago | |
| 70e9a742 | merge Merge pull request #1119 from Pasjonat90D/fix/use-isempty-instead-of-size-#1079 |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
3 months ago | |
| 423cd86f | Bugfix: edge-case with no equiv residues in alignment wasn't dealt with and l... | josemduarte <j****e@g****m> | 3 months ago | |
| e6ba3798 | merge Merge pull request #1118 from JayKamsu/fix-rspec-1940-booleans |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
3 months ago | |
| 3f039fd3 | Fix #1079: Use isEmpty() instead of size() == 0 | Pasjonat90D <2****D@u****m> | 3 months ago | |
| 0af196ff | Fix RSPEC-1940 boolean checks | JasonKamsu <s****j@3****r> | 3 months ago | |
| 94c6ebca | Updating after release | Jose Duarte <j****e@g****m> | 3 months ago | |
| 515c6235 | [maven-release-plugin] prepare for next development iteration | josemduarte <j****e@g****m> | 3 months ago | |
| 611fcade | [maven-release-plugin] prepare release biojava-7.2.3 | josemduarte <j****e@g****m> | 3 months ago | |
| c7261dfd | merge Merge pull request #1117 from biojava/jd/issue1116 |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
3 months ago | |
| 274a36ab | Fix for #1116 | Jose Duarte <j****e@g****m> | 4 months ago | |
| 21d61b1e | merge Merge pull request #1115 from biojava/jd/mvncentralplugin |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
4 months ago | |
| 7b82b27b | Using new mvn central plugin | Jose Duarte <j****e@g****m> | 7 months ago | |
| 5a699eb6 | Updating after release | josemduarte <j****e@g****m> | 11 months ago | |
| b9c4cd0a | [maven-release-plugin] prepare for next development iteration | josemduarte <j****e@g****m> | 11 months ago | |
| 6e7891b6 | [maven-release-plugin] prepare release biojava-7.2.2 | josemduarte <j****e@g****m> | 11 months ago | |
| 4617c333 | merge Merge pull request #1111 from josemduarte/safeguard-polchain |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
11 months ago | |
| 7217ee82 | Safeguards | josemduarte <j****e@g****m> | 11 months ago | |
| c33627f8 | More cleanup | josemduarte <j****e@g****m> | 11 months ago | |
| 743a9fdc | More cleanup | josemduarte <j****e@g****m> | 11 months ago | |
| 381fedd4 | Formatting and docs cleanup | josemduarte <j****e@g****m> | 11 months ago | |
| fe85d304 | merge Merge pull request #1110 from josemduarte/ciftools-upgrade |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
11 months ago | |
| e7211792 | merge Merge pull request #1109 from josemduarte/case-insens-ent-type |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
11 months ago | |
| a24b6f60 | Latest ciftools: should fix performance for some bcif edgecases | josemduarte <j****e@g****m> | 11 months ago | |
| aa0d5767 |
Update biojava-structure/src/main/java/org/biojava/nbio/structure/EntityType....
Co-authored-by: Sebastian Bittrich <j****0@g****m> |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
11 months ago | |
| 501a09e2 | Make entity type case insensitive. Also improved docs | josemduarte <j****e@g****m> | 11 months ago | |
| 602b4d52 | Updating after release | josemduarte <j****e@g****m> | 12 months ago | |
| 82894183 | [maven-release-plugin] prepare for next development iteration | josemduarte <j****e@g****m> | 12 months ago | |
| 5589e1ee | [maven-release-plugin] prepare release biojava-7.2.1 | josemduarte <j****e@g****m> | 12 months ago | |
| 09f175a5 | merge Merge pull request #1108 from biojava/cif-ihm |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
12 months ago | |
| 48cb462e |
Update biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifS...
Co-authored-by: Sebastian Bittrich <s****h@r****g> |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
12 months ago | |
| 2841770e | Deal with missing strand_id | josemduarte <j****e@g****m> | 12 months ago | |
| fdf98644 | Revert "Dealing with struct_ref_seq_dif strand_id by referencing through stru... | josemduarte <j****e@g****m> | 12 months ago | |
| 58136fe3 | Logging | josemduarte <j****e@g****m> | 12 months ago | |
| 82862605 | Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_s... | josemduarte <j****e@g****m> | 12 months ago | |
| a6723d42 | Deal with some missing fields in IHM | josemduarte <j****e@g****m> | 12 months ago | |
| b03fb3f5 | Updates after release | josemduarte <j****e@g****m> | 12 months ago | |
| 6da7fd90 | [maven-release-plugin] prepare for next development iteration | josemduarte <j****e@g****m> | 12 months ago | |
| 48992a6b | [maven-release-plugin] prepare release biojava-7.2.0 | josemduarte <j****e@g****m> | 12 months ago | |
| 77c2911e | merge Merge pull request #1106 from josemduarte/cifparsing-lenient |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
12 months ago | |
| e0e7904d | merge Merge pull request #1107 from josemduarte/asafix-multimodel |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
12 months ago | |
| a5b46ab0 | Review comment | josemduarte <j****e@g****m> | 12 months ago | |
| 324319e2 | Fix: first model is model index 0 | josemduarte <j****e@g****m> | 12 months ago | |
| c45c3dd0 | Bugfix: ASA calculation was by default using all models. Now it will use mode... | josemduarte <j****e@g****m> | about 1 year ago | |
| 12dcb2ce | Another safeguard, that applies to some PDB-IHM entries | josemduarte <j****e@g****m> | about 1 year ago | |
| 65d3dcde | Lenient to missing atom_site.occupancy | josemduarte <j****e@g****m> | about 1 year ago | |
| 93c1c8f9 | Handle more missing fields in struct_ref_seq | josemduarte <j****e@g****m> | about 1 year ago | |
| be55381c | Update guava dependency version to 33.4.0-jre | Michael L Heuer <h****h@a****g> | about 1 year ago | |
| e170fc9d | Avoiding a (harmless) error in mvn site by upgrading javadoc plugin | josemduarte <j****e@g****m> | about 1 year ago | |
| f271214e | Docs | josemduarte <j****e@g****m> | about 1 year ago | |
| ac2084b9 | Forcing enforcer plugin upgrade: somehow version wasn't being taken from plug... | josemduarte <j****e@g****m> | about 1 year ago | |
| d4242d26 | Hopefully good final solution for generating apidocs site | josemduarte <j****e@g****m> | about 1 year ago | |
| 0cd5bd77 | Updating after release | Jose Duarte <j****e@g****m> | about 1 year ago | |
| a1bb15f9 | [maven-release-plugin] prepare for next development iteration | josemduarte <j****e@g****m> | about 1 year ago | |
| c1c8c506 | [maven-release-plugin] prepare release biojava-7.1.4 | josemduarte <j****e@g****m> | about 1 year ago | |
| 54fd26ad | Hopefully fixing issue with site:deploy which was failing (as part of release... | josemduarte <j****e@g****m> | about 1 year ago | |
| 3a312186 | [maven-release-plugin] rollback the release of biojava-7.1.4 | josemduarte <j****e@g****m> | about 1 year ago | |
| 76dfee8c | [maven-release-plugin] prepare for next development iteration | josemduarte <j****e@g****m> | about 1 year ago | |
| f29a5213 | [maven-release-plugin] prepare release biojava-7.1.4 | josemduarte <j****e@g****m> | about 1 year ago | |
| d2ce0893 | Adding explicit plugin versions to profile "release". Somehow the profile doe... | josemduarte <j****e@g****m> | about 1 year ago | |
| 9ef2c300 | [maven-release-plugin] rollback the release of biojava-7.1.4 | josemduarte <j****e@g****m> | about 1 year ago | |
| 3ec109c9 | [maven-release-plugin] prepare for next development iteration | josemduarte <j****e@g****m> | about 1 year ago | |
| 7286c3fe | [maven-release-plugin] prepare release biojava-7.1.4 | josemduarte <j****e@g****m> | about 1 year ago | |
| 5ad2964a | Reports plugin update | josemduarte <j****e@g****m> | about 1 year ago | |
| 6387a2ed | [maven-release-plugin] rollback the release of biojava-7.1.4 | josemduarte <j****e@g****m> | about 1 year ago | |
| cdf14076 | [maven-release-plugin] prepare for next development iteration | josemduarte <j****e@g****m> | about 1 year ago | |
| de1598c0 | [maven-release-plugin] prepare release biojava-7.1.4 | josemduarte <j****e@g****m> | about 1 year ago | |
| f880d18f | merge Merge pull request #1103 from josemduarte/cifparser-gemmifile |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
about 1 year ago | |
| bac14fdc | Format fix | josemduarte <j****e@g****m> | about 1 year ago | |
| 93fe015a | Adding pom metadata required for mvn site:stage. Adding release instructions ... | josemduarte <j****e@g****m> | about 1 year ago | |
| e0084505 | merge Merge pull request #1104 from biojava/javadocfixes |
Jose Manuel Duarte <j****e@g****m>
Committed by: GitHub <n****y@g****m> |
about 1 year ago | |
| 48c29b1c | merge Merge branch 'master' into javadocfixes | josemduarte <j****e@g****m> | about 1 year ago | |
| e516a408 | Plugin updates | josemduarte <j****e@g****m> | about 1 year ago | |
| c3079eae | Javadoc fix: errors in integration-test module | josemduarte <j****e@g****m> | about 1 year ago | |
| b55dc80c | Javadoc fix: errors in ontology module | josemduarte <j****e@g****m> | about 1 year ago | |
| 24310c31 | Javadoc fix: errors in aaprops and survival and modules | josemduarte <j****e@g****m> | about 1 year ago | |
| 0183dc62 | Javadoc fix: errors in protein-disorder module | josemduarte <j****e@g****m> | about 1 year ago | |
| d483bba0 | Javadoc fix: errors in ws module | josemduarte <j****e@g****m> | about 1 year ago | |
| bb073294 | Javadoc fix: errors in modfinder module | josemduarte <j****e@g****m> | about 1 year ago | |
| 3580f7ba | Javadoc fix: errors in genome module | josemduarte <j****e@g****m> | about 1 year ago | |
| aefa34a5 | Javadoc fix: errors in structure-gui module | josemduarte <j****e@g****m> | about 1 year ago | |
| 2bbc8243 | Javadoc fix: remaining errors in structure module. Mostly obsolete references | josemduarte <j****e@g****m> | about 1 year ago | |
| 0c7e9f5f | Javadoc fix: most other errors in structure module | josemduarte <j****e@g****m> | about 1 year ago | |
| 435ebe98 | Javadoc fix: many errors in struct align package | josemduarte <j****e@g****m> | about 1 year ago | |
| d2053f30 | Javadoc fix: many errors in struct align package | josemduarte <j****e@g****m> | about 1 year ago | |
| 2b33a56b | Javadoc fix: many errors in struct align package | josemduarte <j****e@g****m> | about 1 year ago | |
| 5a505242 | More lenient parsing if some fields are missing (e.g. in files output by Gemmi) | josemduarte <j****e@g****m> | about 1 year ago | |
| 52d10538 | Javadoc fix: some more errors from structure module | josemduarte <j****e@g****m> | about 1 year ago | |
| 280f2398 | Javadoc fix: some more errors from structure module | josemduarte <j****e@g****m> | about 1 year ago | |
| ed7ab8e3 | Javadoc fix: a few errors from structure module | josemduarte <j****e@g****m> | about 1 year ago | |
| 71fe1790 | Javadoc fix: all error in alignment module | josemduarte <j****e@g****m> | about 1 year ago | |
| 13e3afef | Javadoc fix: all other errors in core module | josemduarte <j****e@g****m> | about 1 year ago | |
| 1c8d5878 | Javadoc fix: bad tags | josemduarte <j****e@g****m> | about 1 year ago | |
| 2fab7b03 | Javadoc fix: html escaping | josemduarte <j****e@g****m> | about 1 year ago | |
| d1048095 | Javadoc fix: html-like tag not allowed | josemduarte <j****e@g****m> | about 1 year ago | |
| 193287b7 | Javadoc fix: param fixes | josemduarte <j****e@g****m> | about 1 year ago | |
| 27a88ff9 | Javadoc fix: <p> | josemduarte <j****e@g****m> | about 1 year ago |