GitHub / TransBioInfoLab/coMethDMR / commits
| SHA | Message | Author | Date | Stats |
|---|---|---|---|---|
| f784d594 | Update README.md |
David Lukacsovich <d****h@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 05e4b295 | fixed file name |
David Lukacsovich <d****h@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| bc0217c1 | renamed function |
David Lukacsovich <d****h@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 0b68a6ee | fix file name |
David Lukacsovich <d****h@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 172a621e | code to create pre-defined region |
David Lukacsovich <d****h@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 529c9b4d | added liftover file for converting hg19 to hg38 |
David Lukacsovich <d****h@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| da7d1e8a | Update README.md |
lxw391 <l****g@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 0e9e5779 | Update README.md |
lxw391 <l****g@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 1e7e52dd | Update README.md |
David Lukacsovich <d****h@g****m>
Committed by: GitHub <n****y@g****m> |
almost 2 years ago | |
| 524fafc3 | update link for manual |
lxw391 <l****g@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| c0b9f8e8 | add link for BioC release of package |
lxw391 <l****g@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| 3bffc56f | update website attempt 3 | gabrielodom <g****m@f****u> | over 4 years ago | |
| e771dfbd | updating website, again | gabrielodom <g****m@f****u> | over 4 years ago | |
| 0d65eb4d | updating website | gabrielodom <g****m@f****u> | over 4 years ago | |
| cbbe37ce | updating website | gabrielodom <g****m@f****u> | over 4 years ago | |
| c0e858ab | merge Merge pull request #22 from TransBioInfoLab/update_sesame |
Gabriel J. Odom <g****m@f****u>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| fbbe9f01 | added website | gabrielodom <g****m@f****u> | over 4 years ago | |
| 899b5c0f | merge Merge branch 'master' of https://github.com/TransBioInfoLab/coMethDMR | Fernanda Veitzman <f****1@f****u> | over 4 years ago | |
| 01514bfc | merge Merge branch 'update_sesame' | Tiago Chedraoui Silva <t****t@g****m> | over 4 years ago | |
| ce65d845 | Increment to version 0.99.17 | Fernanda Veitzman <f****1@f****u> | over 4 years ago | |
| 46223920 | `localHub = TRUE` not working on my side | Tiago Chedraoui Silva <t****t@g****m> | over 4 years ago | |
| 3cf16e1d | Importing utis #21 | Tiago Chedraoui Silva <t****t@g****m> | over 4 years ago | |
| eb8436b8 | Bug fix | Tiago Chedraoui Silva <t****t@g****m> | over 4 years ago | |
| 0c06d01f | merge Merge pull request #20 from TransBioInfoLab/update_sesame |
Tiago Chedraoui Silva <t****t@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| cf889272 | Fixing function to take into account that we might have data with the same na... | Tiago Chedraoui Silva <t****t@g****m> | over 4 years ago | |
| b3bc8c0d | I think this is all we need for Issue #14; more edits per Issue #18 and Issue... | gabrielodom <g****m@f****u> | over 4 years ago | |
| 77522f64 | Making progress on Issue #14; also related to Issue #18 and Issue #19 | gabrielodom <g****m@f****u> | over 4 years ago | |
| 02e5644e | Check time dropped 30% (about 23 minutes to about 15 minutes), so these chang... | gabrielodom <g****m@f****u> | over 4 years ago | |
| f6a2a8ff | See Issue #14, Issue #18, Issue #19 | gabrielodom <g****m@f****u> | over 4 years ago | |
| ad1f46ba | Code cleaning; see Issue #19 | gabrielodom <g****m@f****u> | over 4 years ago | |
| 3ad47e95 | First pass at removing direct dependency on sesameData:: | gabrielodom <g****m@f****u> | over 4 years ago | |
| 5f5cc3de | Updating Travis to bioc-devel | gabrielodom <g****m@f****u> | over 4 years ago | |
| f2dfb95d | Updating Illumina EPIC annotation version. Closes #14. | gabrielodom <g****m@f****u> | over 4 years ago | |
| ed5d18d7 | bug fix notes per Issue #7 | Gabriel J. Odom <g****m@f****u> | over 4 years ago | |
| 89588ff6 | Sanity checking for values. Closes #11 | gabrielodom <g****m@f****u> | over 4 years ago | |
| 183daac0 | Closes Issue #13. Related to Issue #9, Issue #10, and Issue #12 | gabrielodom <g****m@f****u> | over 4 years ago | |
| 30b3b5d1 | We currently have an error on line 134 of vignette 2 in windows. I'm going to... | gabrielodom <g****m@f****u> | over 4 years ago | |
| 6546bc37 | merge Merge pull request #10 from Ning-L/master |
Gabriel J. Odom <g****m@f****u>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 1c9b9d2e | Include "Stat" column when lmer failed |
Lijiao Ning <l****g@c****r>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 06bc95ec | merge Merge branch 'TransBioInfoLab:master' into master |
Lijiao Ning <l****1@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| c13b3744 | ignore strand while sorting |
Lijiao Ning <l****g@c****r>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 6b53a4f2 | ignore strand while sorting |
Lijiao Ning <l****g@c****r>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| a93b1da8 | ignore strand while sorting |
Lijiao Ning <l****g@c****r>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 04eec913 | Added more install help to the README |
Gabriel J. Odom <g****m@f****u>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| c0e58575 | ignore strand while sorting |
Lijiao Ning <l****g@c****r>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 19d4566d | ignore strand while sorting |
Lijiao Ning <l****g@c****r>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| cc98eb7f | update innstallaltion info |
lxw391 <l****g@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 3e49bc0a | add BioC |
lxw391 <l****g@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 34553b98 | Update GetResiduals.R |
Gabriel J. Odom <g****m@f****u>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 58e9893b | Update README.md |
Gabriel J. Odom <g****m@f****u>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| ba744d09 | Update README.md |
Gabriel J. Odom <g****m@f****u>
Committed by: GitHub <n****y@g****m> |
almost 5 years ago | |
| 4d86af90 | Update README.md |
Gabriel J. Odom <g****m@f****u>
Committed by: GitHub <n****y@g****m> |
almost 5 years ago | |
| 5762fddc | Removed hidden code flag in vignette. The knit version of the vignette would ... | gabrielodom <g****m@f****u> | almost 5 years ago | |
| 1edd8558 | Remove keyword | Tiago Chedraoui Silva <t****t@g****m> | almost 5 years ago | |
| ab2efa49 | Update README.md |
Gabriel J. Odom <g****m@f****u>
Committed by: GitHub <n****y@g****m> |
almost 5 years ago | |
| 28f509d7 | We were checking for HM450 for both 450k and EPIC by mistake. Also, we are tr... | Gabriel J. Odom <g****m@f****u> | almost 5 years ago | |
| df2fefbb | Fixing namespace | Tiago Chedraoui Silva <t****t@g****m> | almost 5 years ago | |
| 84362174 | Using most update sesame version | Tiago Chedraoui Silva <t****t@g****m> | almost 5 years ago | |
| 64f54b82 | Incremented version to 0.99.10 | Fernanda Veitzman <f****1@f****u> | almost 5 years ago | |
| 348f0493 | Added buildignore files to ignore .travis.yml during build for all collaborators | Gabriel J. Odom <g****m@f****u> | almost 5 years ago | |
| 548f6dea | Renaming rds | Tiago Chedraoui Silva <t****t@g****m> | almost 5 years ago | |
| ec876937 | Another attempt to fix the sesameData dependency per Issue #1 | gabrielodom <g****m@f****u> | almost 5 years ago | |
| e278bc9d | Modifying function to one not hidden | Tiago Chedraoui Silva <t****t@g****m> | almost 5 years ago | |
| 3e1e22cf | undo test | Fernanda Veitzman <f****1@f****u> | almost 5 years ago | |
| cf44fa8d | test commit | Fernanda Veitzman <f****1@f****u> | almost 5 years ago | |
| 49a9e0ea | Per Issue #1, we added example code to connect our downstream analysis to ups... | gabrielodom <g****m@f****u> | almost 5 years ago | |
| d0af9add | Added support for GRanges-class objects per Issue #1 | gabrielodom <g****m@f****u> | almost 5 years ago | |
| 09d1aefe | merge removing tentative support for HM27: this array is far too sparse for our sub... | gabrielodom <g****m@f****u> | almost 5 years ago | |
| 30237101 | Per Issue #1, cleaning up lots of code and documentation | gabrielodom <g****m@f****u> | almost 5 years ago | |
| 037fd9ca | Bug fix | Tiago Chedraoui Silva <t****t@g****m> | almost 5 years ago | |
| fc8a620e | Bug fix | Tiago Chedraoui Silva <t****t@g****m> | almost 5 years ago | |
| 0763d7b3 | Adding support to 27k in function OrderCpGsByLocation | Tiago Chedraoui Silva <t****t@g****m> | almost 5 years ago | |
| 824b7da4 | Working on Issue #1. One of the comments was that our code has commented-out ... | gabrielodom <g****m@f****u> | almost 5 years ago | |
| 648376a9 | .RDS preplaced to .rds | Fernanda Veitzman <f****1@f****u> | almost 5 years ago | |
| 4df4b852 | Per Issue #1, trying to find+fix errors | gabrielodom <g****m@f****u> | almost 5 years ago | |
| 3584c0fa | Per Issue #7 and for the Bioconductor submission, we are making edits to the ... | Gabriel J. Odom <g****m@f****u> | almost 5 years ago | |
| a5ebb39f | update readme file |
lxw391 <l****g@g****m>
Committed by: GitHub <n****y@g****m> |
almost 5 years ago | |
| 507e5d3d | Updated vignetes to check code; we still see a bplapply error at random (we c... | Gabriel J. Odom <g****m@f****u> | almost 5 years ago | |
| 76736cb4 | Moving calls to sesameData:: functions to .onLoad(). Made other miscellaneous... | Gabriel J. Odom <g****m@f****u> | about 5 years ago | |
| fdda3e80 | Updated Description, Vignettes 1 and 2. | Fernanda Veitzman <f****1@f****u> | about 5 years ago | |
| 57d697af | Removing comments from travis | Tiago Chedraoui Silva <t****t@g****m> | about 5 years ago | |
| 7dc05da3 | Update travis | Tiago Chedraoui Silva <t****t@g****m> | about 5 years ago | |
| bdcdbafc | small changes to travis | Tiago Chedraoui Silva <t****t@g****m> | about 5 years ago | |
| 73259dcb | Updating travis | Tiago Chedraoui Silva <t****t@g****m> | about 5 years ago | |
| 707ff83c | Add travis CI config | Tiago Chedraoui Silva <t****t@g****m> | about 5 years ago | |
| cb42e225 | Adding cache download before data access | Tiago Chedraoui Silva <t****t@g****m> | about 5 years ago | |
| aa0c6ac3 | Per Issue #1, updated data documentation to still work after LazyData was set... | Gabriel J. Odom <g****m@f****u> | over 5 years ago | |
| 26ee24f7 | Fixing redudant paste, see issue #1 | Fernanda Veitzman <f****1@f****u> | over 5 years ago | |
| ae98b938 | Version bump | Fernanda Veitzman <f****1@f****u> | over 5 years ago | |
| 5341e860 | Version bump | Gabriel J. Odom <g****m@f****u> | over 5 years ago | |
| 3561e4e5 | ident code | Tiago Chedraoui Silva <t****t@g****m> | over 5 years ago | |
| 075192e9 | Stripping out all unnecessary data sets. We've moved them to coMethDMR_data. ... | gabrielodom <g****m@f****u> | over 5 years ago | |
| b3cf28f7 | Working on documenting the supplemental data sets per Issue #5 | gabrielodom <g****m@f****u> | over 5 years ago | |
| 8d91ad9d | Updating function per Issue #4, and we're also trying to reduce unnecessary c... | Gabriel J. Odom <g****m@f****u> | over 5 years ago | |
| 071bf075 | Per Issue #2, reduced computing time in tests and function examples | Gabriel J. Odom <g****m@f****u> | over 5 years ago | |
| 9ed5d573 | Reducing time, by removing tests that loads data and are not a main function ... | Tiago Chedraoui Silva <t****t@g****m> | over 5 years ago | |
| 6e335a02 | Updating time comments in vignette 2 | Gabriel J. Odom <g****m@f****u> | over 5 years ago | |
| cbe76918 | #2 Reducing some time | Tiago Chedraoui Silva <t****t@g****m> | over 5 years ago | |
| 58a88ef1 | Reducing example | Tiago Chedraoui Silva <t****t@g****m> | over 5 years ago | |
| 8b13e74f | #2 reduce OrderCpGsByLocation example | Tiago Chedraoui Silva <t****t@g****m> | over 5 years ago |