commits

AI Toolkit for Healthcare Imaging

SHA	Message	Author	Date
e04a8021	fix(safeeval): evaluate rewritten AST instead of original string (#9063) Co-authored-by: Eric Kerfoot <1**d@um>, coderabbitai[bot] <1]@um> Signed-off-by: Chhayan Jain <cn@gm>, chhayankjain <c4@gm>, Eric Kerfoot <1d@u**m>	Chhayank <3**n@um> Committed by: GitHub <ny@g**m>	8 days ago
43c0aaed	Safe eval (#8936) Co-authored-by: pre-commit-ci[bot] <6**]@um> Signed-off-by: Eric Kerfoot <1d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	9 days ago
6d87117d	Modernising Build Process (#9010) Co-authored-by: pre-commit-ci[bot] <6**]@um>, YunLiu <5u@um> Signed-off-by: Eric Kerfoot <1d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	9 days ago
3e2ff2b1	Fix GHSA-873f-pvrv-4x83: warn before executing a bundle's config in load()/ru... Co-authored-by: Claude Sonnet 5 <n**y@am>, Eric Kerfoot <1d@um> Signed-off-by: R. Garcia-Dias <rd@gm>, Eric Kerfoot <1d@u**m>	Rafael Garcia-Dias <r**d@gm> Committed by: GitHub <ny@g**m>	10 days ago
66448985	Add NaViT: Native Resolution Vision Transformer with Patch n' Pack (#9011) Co-authored-by: pre-commit-ci[bot] <6**]@um>, Eric Kerfoot <1d@um> Signed-off-by: Vikash Gupta <wh@g**m>	Vikash Gupta <w**h@gm> Committed by: GitHub <ny@g**m>	10 days ago
7f6bf2db	feat: replace mypy and pytype with pyrefly for static type analysis (#8868) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: R. Garcia-Dias <rd@g**m>	Rafael Garcia-Dias <r**d@gm> Committed by: GitHub <ny@g**m>	13 days ago
1a165c93	Raise OptionalImportError for unavailable explicit image readers (#9006) Signed-off-by: Minsu Kim <m**8@g**m>	Minsu Kim <6**g@um> Committed by: GitHub <ny@g**m>	14 days ago
faccb5a6	Fix clipping boxes with large coordinates (#9047) Co-authored-by: Vikash Gupta <w**h@gm> Signed-off-by: Rajioba1 <rn@g**m>	Rajioba1 <r**n@gm> Committed by: GitHub <ny@g**m>	14 days ago
87060c45	Validate downloaded file integrity and raise ValueError on hash mismatch (#8833) Co-authored-by: pre-commit-ci[bot] <6**]@um>, Eric Kerfoot <1d@um> Signed-off-by: Enoch Mok <ey@gm>, Enoch Mok <6y@u**m>	Enoch Mok <6**y@um> Committed by: GitHub <ny@g**m>	20 days ago
8690ae74	fix(MetaTensor): astype with torch dtype now returns MetaTensor preserving me... Co-authored-by: Claude <n**y@am>, Eric Kerfoot <1d@um> Signed-off-by: Oleksandr Sanin <an@g**m>	Oleksandr_Sanin <a**n@gm> Committed by: GitHub <ny@g**m>	28 days ago
ed76cd56	Fix class_labels mutation across multi-metric write_metrics_reports (#8902) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**5@gm> Committed by: GitHub <ny@g**m>	28 days ago
3ee058bd	docs: add documentation to CONTRIBUTING.md (#8878) Co-authored-by: Eric Kerfoot <1**d@um>, Claude Sonnet 4.6 <ny@am> Signed-off-by: R. Garcia-Dias <rd@g**m>	Rafael Garcia-Dias <r**d@gm> Committed by: GitHub <ny@g**m>	about 1 month ago
184708ac	fix typos in docs: lazy_resampling, modules, whatsnew_1_5 (#9012) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Vikash Gupta <wh@g**m>	Vikash Gupta <w**h@gm> Committed by: GitHub <ny@g**m>	about 1 month ago
a3d5160b	Perf: faster get_largest_connected_component_mask (bincount + LUT gather) (#8... Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**5@gm> Committed by: GitHub <ny@g**m>	about 1 month ago
8885fcbb	Make Fuzzy Gdown Argument Version-dependent (#8986) Signed-off-by: Eric Kerfoot <1**d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	about 1 month ago
5da24720	Add BoundaryLoss (#8916) Co-authored-by: Colin Son <t**2@um>, Eric Kerfoot <1d@um> Signed-off-by: Colin Son <t2@u**m>	Colin Son <c**n@fm> Committed by: GitHub <ny@g**m>	about 1 month ago
3a458fe7	[pre-commit.ci] pre-commit suggestions (#8984) Co-authored-by: pre-commit-ci[bot] <6**]@um>, Eric Kerfoot <1d@u**m>	pre-commit-ci[bot] <6**]@um> Committed by: GitHub <ny@g**m>	about 1 month ago
fd12fdcc	Fix non-functional jitter in Warp.get_reference_grid (#8953) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@kk>, Soumya Snigdha Kundu <s5@gm>, Eric Kerfoot <1d@u**m>	Soumya Snigdha Kundu <s**5@gm> Committed by: GitHub <ny@g**m>	about 2 months ago
3bd4c4f2	Warn when PydicomReader falls back to an identity affine (#8468) (#8934) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Lanre Shittu <1a@um>, Eric Kerfoot <1d@u**m>	Lanre Shittu <1**a@um> Committed by: GitHub <ny@g**m>	about 2 months ago
1a26bc9e	fix: warn when PydicomReader cannot determine affine from DICOM metadata (Fix... Signed-off-by: Raphael Malikian <r**n@g**m>	Raphael Malikian <r**n@gm> Committed by: GitHub <ny@g**m>	about 2 months ago
10674bc9	Fix division by zero in Warp for singleton spatial dimensions (#8946) Signed-off-by: VenkateswarluNagineni <v**2@t**u>	Venkateswarlu Nagineni <v**2@tu> Committed by: GitHub <ny@g**m>	about 2 months ago
36a6f0b6	HyenaUnetR (SwinUnetR + HyenaND): subquadratic alternative to windowed self-... Co-authored-by: pre-commit-ci[bot] <6**]@um>, Claude Opus 4.7 (1M context) <ny@am> Signed-off-by: Farhad Ramezanghorbani <fr@n**m>	Farhad Ramezanghorbani <f**h@um> Committed by: GitHub <ny@g**m>	about 2 months ago
229f519f	Perf: skip redundant full-image mask on StdShiftIntensity nonzero=False path ... Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	about 2 months ago
abbb47ca	fix(data): avoid divide-by-zero in pydicom affine for single-slice volumes (#... Co-authored-by: Eric Kerfoot <1**d@um>, Copilot Autofix powered by AI <1t@um> Signed-off-by: SID <na@gm>, Siddhardha Nanda <91@u**m>	Siddhardha Nanda <9**1@um> Committed by: GitHub <ny@g**m>	about 2 months ago
eb74488c	Add AbsoluteVolumeDifferenceMetric to monai.metrics (#8945) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: MDSALMANSHAMS <s7@g**m>	Md Salman Shams <6**S@um> Committed by: GitHub <ny@g**m>	about 2 months ago
5be3db9c	Enable macOS Install Test Only (#8976) Signed-off-by: Eric Kerfoot <1**d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	about 2 months ago
f1dcac48	docs: clarify RandWeightedCrop(d) does not crop the weight map (#7851) (#8962) Signed-off-by: Soumya Snigdha Kundu <s**u@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	about 2 months ago
2e17e32e	Bump actions/cache from 5 to 6 (#8964) Co-authored-by: dependabot[bot] <4**]@um> Signed-off-by: dependabot[bot] <st@g**m>	dependabot[bot] <4**]@um> Committed by: GitHub <ny@g**m>	about 2 months ago
3630c309	Bump codecov/codecov-action from 6 to 7 (#8966) Co-authored-by: dependabot[bot] <4**]@um> Signed-off-by: dependabot[bot] <st@g**m>	dependabot[bot] <4**]@um> Committed by: GitHub <ny@g**m>	about 2 months ago
a5fd9bf9	Bump actions/checkout from 4 to 7 (#8965) Co-authored-by: dependabot[bot] <4**]@um>, Eric Kerfoot <1d@um> Signed-off-by: dependabot[bot] <st@g**m>	dependabot[bot] <4**]@um> Committed by: GitHub <ny@g**m>	about 2 months ago
61f50921	Support configurable rotation order in create_rotate (#8963) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	about 2 months ago
d43bf62f	fix: emit nnUNet store_true flags as bare CLI args in nnUNetV2Runner (#8968) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@kk>, Eric Kerfoot <1d@u**m>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	about 2 months ago
946fd4f6	Fix nnUNet runner store_true flag command construction (#8941) (#8944) Signed-off-by: Soumya Snigdha Kundu <s**u@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	about 2 months ago
482d1d91	Perf: Use a KDTree on CPU instead of full EDT for 1.5x to 16x faster metric c... Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: J Berg <j9@g**m>	J Berg <j**9@gm> Committed by: GitHub <ny@g**m>	about 2 months ago
d6713fd3	docs: add Windows BUILD_MONAI install instructions (#8906) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Lanre Shittu <1a@u**m>	Lanre Shittu <1**a@um> Committed by: GitHub <ny@g**m>	about 2 months ago
0f5c5ec7	Remove dead and redundant code across monai/ (#8952) Signed-off-by: Soumya Snigdha Kundu <s**u@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	about 2 months ago
683e1d16	Fix FROC num_targets miscount when labels_to_exclude is set (#8951) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	about 2 months ago
54678aa2	fix: replace `raise UserWarning` with `warnings.warn()` in verify_report_form... Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Raphael Malikian <rn@g**m>	Raphael Malikian <r**n@gm> Committed by: GitHub <ny@g**m>	about 2 months ago
083f9110	fix: guard division by zero in DICOMReader._get_affine for single-slice volum... Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Raphael Malikian <rn@g**m>	Raphael Malikian <r**n@gm> Committed by: GitHub <ny@g**m>	about 2 months ago
03d1c5c0	Force GC in WSIReader tests to suppress ResourceWarning for unclosed files (#... Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Vishnu Kannaujia <va@g**m>	Vishnu Kannaujia <v**a@gm> Committed by: GitHub <ny@g**m>	about 2 months ago
9c3b441a	Use compact [1,-2,1] kernel for BendingEnergyLoss second derivatives (#8918) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Vishnu Kannaujia <va@g**m>	Vishnu Kannaujia <v**a@gm> Committed by: GitHub <ny@g**m>	about 2 months ago
b7d14c89	Enabling MetaTensor Persistent Caching (#8940) Co-authored-by: pre-commit-ci[bot] <6**]@um> Signed-off-by: Eric Kerfoot <1d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	about 2 months ago
4ba89bd8	fix: adaptor map_names calls dict as function when inputs is a name-mapping d... Signed-off-by: Soumya Snigdha Kundu <s**u@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	2 months ago
5e42fbf3	fix: add missing stacklevel=2 to warnings.warn() in losses/ (Fixes #8929) (#8... Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Raphael Malikian <rn@gm>, rtmalikian <rn@g**m>	Raphael Malikian <r**n@gm> Committed by: GitHub <ny@g**m>	2 months ago
2dbbd493	fix: add missing stacklevel=2 to warnings.warn() in metrics/ (Fixes #8931) (#... Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Raphael Malikian <rn@gm>, rtmalikian <rn@g**m>	Raphael Malikian <r**n@gm> Committed by: GitHub <ny@g**m>	2 months ago
91b1ad7c	Fix batched_nms for ndarray inputs (#8901) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	2 months ago
58fab44e	tests: remove more duplicate test cases (#8943) Signed-off-by: Soumya Snigdha Kundu <s**u@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	2 months ago
87ff41aa	fix(losses): register buffers in GlobalMutualInformationLoss (#8872) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Oleksandr Sanin <an@gm>, Eric Kerfoot <1d@u**m>	Oleksandr_Sanin <a**n@gm> Committed by: GitHub <ny@g**m>	2 months ago
8b5725bf	Fix division by zero in clDice loss harmonic mean (#8739)	hari <h**2@gm> Committed by: GitHub <ny@g**m>	2 months ago
557ffaa5	fix: update Dockerfile and requirements-dev.txt for MONAI 1.6 tutorial compat... Signed-off-by: R. Garcia-Dias <r**d@g**m>	Rafael Garcia-Dias <r**d@gm> Committed by: GitHub <ny@g**m>	2 months ago
03338b2a	Improve Affine transform documentation and add compute_w_affine tests (#8727) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Mohamed Salah <eb@gm>, Eric Kerfoot <1d@u**m>	Mohamed Salah <e**b@gm> Committed by: GitHub <ny@g**m>	2 months ago
26326b5c	Add explicit spatial_ndim tracking to MetaTensor (#8765) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	2 months ago
31419ab1	tests: remove duplicate and dead test cases (#8896) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	2 months ago
c9c2d507	ci: mute dynamic __warningregistry__ logs noise in pytest suite (#8893) Co-authored-by: jet1technology-tech <j**y@rn>, Eric Kerfoot <1d@um> Signed-off-by: jet1technology-tech <jy@r**n>	Priyanshu Singh <j**8@gm> Committed by: GitHub <ny@g**m>	2 months ago
6abb7502	Fix nnUNet test directory leakage into current working directory (#8887) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Eric Kerfoot <1d@um>, Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	2 months ago
2b501101	Add docstring note that Transpose/Transposed do not update the affine matrix ... Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Akarsh Doki <dk@n**u>	Akarsh Doki <1**i@um> Committed by: GitHub <ny@g**m>	2 months ago
15f50736	Update Weekly Preview Version (#8917) Signed-off-by: Eric Kerfoot <1**d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	2 months ago
eccefc57	Release 1.6 Doc Updates (#8882) Co-authored-by: pre-commit-ci[bot] <6**]@um>, coderabbitai[bot] <1]@um> Signed-off-by: Eric Kerfoot <1d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	3 months ago
8a89dd52	Minor Fixes From Testing 1.6 (#8897) Signed-off-by: Eric Kerfoot <1**d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	3 months ago
2a7d0cf0	CodeQL and GPU Actions Update (#8883) Signed-off-by: Eric Kerfoot <1**d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	3 months ago
013bda0a	Adding allow_pickle argument (#8875) Signed-off-by: Eric Kerfoot <1**d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	3 months ago
ddf37958	Fix For ghsa-rghg-q7wp-9767 (#8885) Signed-off-by: Eric Kerfoot <1**d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	3 months ago
24da7c77	Register GlobalMutualInformationLoss bin_centers as buffer (#8869) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: ugbotueferhire <ue@g**m>	eferhire ugbotu <u**e@gm> Committed by: GitHub <ny@g**m>	3 months ago
837dc32b	fix(networks): replace Tensor \| None with Optional[Tensor] for TorchScript co... Co-authored-by: pre-commit-ci[bot] <6**]@um>, Eric Kerfoot <1d@um> Signed-off-by: Oleksandr Sanin <an@g**m>	Oleksandr_Sanin <a**n@gm> Committed by: GitHub <ny@g**m>	3 months ago
dc0f59c9	Make get_norm_layer repr test tolerant of PyTorch bias= field (#8880) Signed-off-by: Hans Johnson <h**n@u**u>	Hans J. Johnson <h**n@uu> Committed by: GitHub <ny@g**m>	3 months ago
e33941c7	fix: only instantiate CrossAttentionBlock when with_cross_attention=True (#8848) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: chhayankjain <c4@g**m>	Chhayank <3**n@um> Committed by: GitHub <ny@g**m>	3 months ago
63a518e5	Further CICD Cleanup (#8867) Co-authored-by: pre-commit-ci[bot] <6**]@um> Signed-off-by: Eric Kerfoot <1d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	3 months ago
0a8d9453	8587 test erros on pytorch release 2508 on series 50 (#8770) Co-authored-by: Claude <n**y@am>, pre-commit-ci[bot] <6]@um>, Eric Kerfoot <1d@um> Signed-off-by: R. Garcia-Dias <rd@gm>, Claude <ny@a**m>	Rafael Garcia-Dias <r**d@gm> Committed by: GitHub <ny@g**m>	3 months ago
61875290	8627 perceptual loss errors out after hitting the maximum number of downloads... Co-authored-by: Virginia Fernandez <v**z@kk>, pre-commit-ci[bot] <6]@um>, Eric Kerfoot <1d@um>, coderabbitai[bot] <1]@um>, Yun Liu <yl@nm>, Rafael Garcia-Dias <rd@gm> Signed-off-by: Eric Kerfoot <1d@um>, Virginia Fernandez <6z@um>, Virginia Fernandez <vz@kk>, Yun Liu <yl@nm>, Rafael Garcia-Dias <rd@g**m>	Virginia Fernandez <6**z@um> Committed by: GitHub <ny@g**m>	3 months ago
a6b672a2	Fix #8239: Enhance SoftclDiceLoss and SoftDiceclDiceLoss with DiceLoss-compat... Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@kk>, Soumya Snigdha Kundu <s5@g**m>	Soumya Snigdha Kundu <s**5@gm> Committed by: GitHub <ny@g**m>	3 months ago
4f09ed61	Fix: make y optional in ignore_background (#8647) Co-authored-by: Eric Kerfoot <1**d@um>, Copilot <1t@um> Signed-off-by: Tristan Kirscher <8r@um>, Eric Kerfoot <1d@u**m>	Tristan Kirscher <8**r@um> Committed by: GitHub <ny@g**m>	3 months ago
27a03ef2	Add nested dot-notation access to ConfigParser (#6837) (#8858) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	3 months ago
286e9050	Replace BaseException with Exception across codebase (#8859) Signed-off-by: Oleksandr Sanin <a**n@gm>, Oleksandr Sanin <an@gm>, Oleksandr Yizchak Sanin <an@g**m>	Oleksandr_Sanin <a**n@gm> Committed by: GitHub <ny@g**m>	3 months ago
ef2acfb0	4609: Add AUC-Margin Loss for AUROC optimization (#8719) Co-authored-by: pre-commit-ci[bot] <6**]@um>, Eric Kerfoot <1d@um> Signed-off-by: Shubham Chandravanshi <s8@g**m>	Shubham Chandravanshi <8**9@um> Committed by: GitHub <ny@g**m>	3 months ago
063081ff	docs: fix docstring parameter name, add missing Args and Raises secti… (#8849) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: chhayankjain <c4@g**m>	Chhayank <3**n@um> Committed by: GitHub <ny@g**m>	3 months ago
8b785896	docs: add missing docstrings, Raises sections, and fix Args in networ… (#8850) Signed-off-by: chhayankjain <c**4@g**m>	Chhayank <3**n@um> Committed by: GitHub <ny@g**m>	3 months ago
9078a72f	Replace pickle with JSON in Auto3DSeg algo serialization (#8695) Co-authored-by: Eric Kerfoot <1**d@um>, pre-commit-ci[bot] <6]@um> Signed-off-by: Soumya Snigdha Kundu <su@kk>, Soumya Snigdha Kundu <s5@g**m>	Soumya Snigdha Kundu <s**u@kk> Committed by: GitHub <ny@g**m>	3 months ago
2a98f63b	Feature added: Get WSI at mpp (#7574) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Nikolas Schmitz <nz@r**e>	Nikolas Schmitz <1**z@um> Committed by: GitHub <ny@g**m>	3 months ago
586dea15	fix: replace set_track_meta with F.interpolate in RandSimulateLowResolution (... Co-authored-by: pre-commit-ci[bot] <6**]@um>, Eric Kerfoot <1d@um> Signed-off-by: chhayankjain <c4@g**m>	Chhayank <3**n@um> Committed by: GitHub <ny@g**m>	4 months ago
eb5e8e10	Fix nested Compose map_items in forward and inverse paths (#8787) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**5@gm> Committed by: GitHub <ny@g**m>	4 months ago
7ab5908d	Fix align_corners mismatch in AffineTransform (#8690) Signed-off-by: Soumya Snigdha Kundu <s**u@k**k>	Soumya Snigdha Kundu <s**5@gm> Committed by: GitHub <ny@g**m>	4 months ago
a4d1a0d5	Fix #8442: pass meta_data to EnsureChannelFirst when track_meta is False (#8835) Signed-off-by: UGBOMEH OGOCHUKWU WILLIAMS <w**h@g**m>	UGBOMEH OGOCHUKWU WILLIAMS <w**h@gm> Committed by: GitHub <ny@g**m>	4 months ago
5ebcade9	Fix incomplete activation validation in HausdorffDTLoss (#8841) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**5@gm> Committed by: GitHub <ny@g**m>	4 months ago
c95d9a92	Refactoring min-dep tests (#8561) Co-authored-by: pre-commit-ci[bot] <6**]@um> Signed-off-by: Eric Kerfoot <1d@u**m>	Eric Kerfoot <1**d@um> Committed by: GitHub <ny@g**m>	4 months ago
862f3a63	Avoid eager C-order copy in NibabelReader (fixes #8107) (#8825) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@kk>, Eric Kerfoot <1d@u**m>	Soumya Snigdha Kundu <s**5@gm> Committed by: GitHub <ny@g**m>	4 months ago
098a4430	Enable global coordinates in spatial crop transforms (#8794) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Emanuilo Jovanovic <ec@so>, Emanuilo Jovanovic <ec@h**m>	Emanuilo Jovanovic <e**c@hm> Committed by: GitHub <ny@g**m>	4 months ago
65beb58b	Add parameter to DiceMetric and DiceHelper classes (#8774) Co-authored-by: pre-commit-ci[bot] <6**]@um> Signed-off-by: Vijay Vignesh Prasad Rao <v2@g**m>	Vijay Vignesh <v**2@gm> Committed by: GitHub <ny@g**m>	4 months ago
d0650f3b	fix: use register_buffer for kernel and kernel_vol in LocalNormalizedCrossCor... Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Zeesejo <9o@um>, Zeeshan Modi <9o@um>, Eric Kerfoot <1d@u**m>	Zeeshan Modi <9**o@um> Committed by: GitHub <ny@g**m>	4 months ago
49b10126	fix(apps/nuclick): replace np.random.choice with self.R.choice in Add… (#8836) Signed-off-by: Zeeshan Modi <9**o@u**m>	Zeeshan Modi <9**o@um> Committed by: GitHub <ny@g**m>	4 months ago
71f16edd	7951 anchors are not centered on grid cells (#8475) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: hachoj <hi@g**m>	Harrison Chojnowski <9**j@um> Committed by: GitHub <ny@g**m>	4 months ago
3bb9d8ef	Fix multi-axis shear transform to compose individual shear matrices (#8778) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Soumya Snigdha Kundu <su@k**k>	Soumya Snigdha Kundu <s**5@gm> Committed by: GitHub <ny@g**m>	4 months ago
26d6dee2	Add EmbeddingCollapseMetric: detect representational collapse in medi… (#8815) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: ekansh-arora0 <e0@g**m>	ekansh-arora0 <1**0@um> Committed by: GitHub <ny@g**m>	4 months ago
7f6b7e52	Refactor download_url test into TestDownloadUrl class (#8829) Co-authored-by: pre-commit-ci[bot] <6**]@um> Signed-off-by: Enoch Mok <ey@g**m>	Enoch Mok <6**y@um> Committed by: GitHub <ny@g**m>	4 months ago
851054cd	Fix: handle precomputed crops and safe no-grad cleanup in auto3dseg (#8803) Signed-off-by: Jun Hyeok Lee <b**3@n**m>	Jun Hyeok Lee <b**3@nm> Committed by: GitHub <ny@g**m>	4 months ago
1dc47a5a	Docs: add spatial shape constraints to SegResNetDS docstring (#8797) Signed-off-by: Talhax55z <m**3@g**m>	Muhammad Talha <m**3@gm> Committed by: GitHub <ny@g**m>	4 months ago
a537499f	Fix: swap input_amplitude and target_amplitude in JukeboxLoss.forward (#8821) Signed-off-by: Zeeshan Modi <9**o@u**m>	Zeeshan Modi <9**o@um> Committed by: GitHub <ny@g**m>	4 months ago
c4346071	Fix TrainableBilateralFilter 3D input validation (#7444) (#8729) Co-authored-by: Eric Kerfoot <1**d@um> Signed-off-by: Abdoulaye Diallo <a8@gm>, Abdoulaye Diallo <1e@um>, Eric Kerfoot <1d@u**m>	Abdoulaye Diallo <1**e@um> Committed by: GitHub <ny@g**m>	5 months ago
252d26e7	Fix memory leak in optional_import traceback handling (#8782) Co-authored-by: Eric Kerfoot <1**d@um>, pre-commit-ci[bot] <6]@um> Signed-off-by: Soumya Snigdha Kundu <su@kk>, Soumya Snigdha Kundu <s5@g**m>	Soumya Snigdha Kundu <s**5@gm> Committed by: GitHub <ny@g**m>	5 months ago
089f02d4	Add support for configurable GD-enhancing tumor label in ConvertToMul… (#8779) Co-authored-by: pre-commit-ci[bot] <6**]@um>, Eric Kerfoot <1d@um> Signed-off-by: Abdessamad <a6@gm>, Abdessamad Misdak <a6@g**m>	Abdessamad Misdak <9**s@um> Committed by: GitHub <ny@g**m>	5 months ago
ee5b4d4e	Excluded from MANIFEST.in and setup.py tests folder and subfolders. (#8807) Co-authored-by: fjvera <f**a@gm>, Eric Kerfoot <1d@um> Signed-off-by: Javier Vera Olmos <fo@g**m>	Javier Vera Olmos <f**o@gm> Committed by: GitHub <ny@g**m>	5 months ago

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