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f64df3f4
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Update links
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Thomas Kuilman <t****n@n****l>
|
about 8 years ago
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1785afa7
|
Changed documentationIII
|
Thomas Kuilman <t****n@n****l>
|
about 9 years ago
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a44d1f4c
|
Changed documentationII
|
Thomas Kuilman <t****n@n****l>
|
about 9 years ago
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bcb42d7f
|
Changed documentation
|
Thomas Kuilman <t****n@n****l>
|
about 9 years ago
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fdcf9792
|
Changes to documentation II
|
Thomas Kuilman <t****n@n****l>
|
about 9 years ago
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1d877950
|
Changes to documentation
|
Thomas Kuilman <t****n@n****l>
|
about 9 years ago
|
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e27e985b
|
Update todo
|
Thomas Kuilman <t****n@n****l>
|
over 9 years ago
|
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74afa195
|
Changes to README and vignette
|
Thomas Kuilman <t****n@n****l>
|
over 10 years ago
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527479f4
|
Changes to README and addition of CITATION
|
Thomas Kuilman <t****n@n****l>
|
over 10 years ago
|
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0cde467d
|
Updated readme
|
Thomas Kuilman <t****n@n****l>
|
over 10 years ago
|
|
|
8b2f0152
|
Added library(GenomicAlignments) to ProperReads() for bioc-devel support II
|
Thomas Kuilman <t****n@n****l>
|
almost 11 years ago
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e0a5c3d8
|
Added library(GenomicAlignments) to ProperReads() for bioc-devel support
|
Thomas Kuilman <t****n@n****l>
|
almost 11 years ago
|
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7acdbe92
|
Fixed another bug related to checking whether identical reference genomes hav...
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Thomas Kuilman <t****n@n****l>
|
about 11 years ago
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8780d986
|
Updated NEWS
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
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bebaee5d
|
Implemented an improved version to check whether bams have been mapped to sam...
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Thomas Kuilman <t****n@n****l>
|
about 11 years ago
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ea99c8a0
|
This closes #3
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
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bca4dce9
|
Changed README
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
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64cb4d78
|
Fix for mixing chromosomes during plotting IV
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
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2433e834
|
Fix for mixing chromosomes during plotting III
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
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5365fa78
|
Fix for mixing chromosomes during plotting II
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
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14691f49
|
Fix for mixing chromosomes during plotting
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
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5a9b2423
|
Updated README to clear up issue regarding X11 / PNG libraries II
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
16937983
|
Updated README to clear up issue regarding X11 / PNG libraries
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
aaa24257
|
Updated README
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
12ffe39f
|
Added MAD-values to CopywriteR log file II
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
8848131e
|
Added MAD-values to CopywriteR log file
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
76370033
|
Update README
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
92c53646
|
Updated todo list
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
a2e5ac26
|
Updated README to include platform-specific bug
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
a965d467
|
Updated README to include mm10 bug
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
04715ccd
|
Adjusted error message about differing chromosome names
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
96e9b300
|
Bumped version to 2.0.2
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
8a10db67
|
Updated DESCRIPTION
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
23777d6a
|
Included GitHub URL in DESCRIPTION
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
cd3a9d83
|
Updated NEWS
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
71dc2039
|
Reset working directory after exit
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
2500006b
|
Switch git-svn bridge to release branch of Bioconductor
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
deebd74b
|
Updated README
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
a5be3a0b
|
Corrected dependency on R to version 3.2 III
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
54aec9d9
|
Corrected dependency on R to version 3.2 II
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
80cef900
|
Corrected dependency on R to version 3.2
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
627226af
|
Updated documentation
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
31ff6ce2
|
Bumped version number to 2.1.0
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
797a4425
|
Update DESCRIPTION and NEWS for new release fixing EAP bug II
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
52d746d6
|
Update DESCRIPTION and NEWS for new release fixing EAP bug
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
eb8be39f
|
Resolving EAP bug
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
b51d9438
|
Update vignette
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
dc09beff
|
Updated README to describe error with non-unique .bam file names
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
3782c32e
|
Update README
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
58ef8ef7
|
Reset R dependency to 3.1.0 and updated README to include Bioconductor link
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
4f4ce9bf
|
Improve logging output
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
089b69d2
|
Fixed bug related to logging when .bam are not indexed 2
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
edf8a89d
|
Fixed bug related to logging when .bam are not indexed
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
23dd42ba
|
Update README
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
d6e4e6f7
|
Added troubleshooting section in vignette
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
d7145450
|
Added Bioconductor 3.0 dependency to README
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
9f4c5fba
|
Delete .DS_Store
|
thomasKuilman <t****n@n****l>
|
about 11 years ago
|
|
|
d9411f9f
|
Delete test
|
thomasKuilman <t****n@n****l>
|
about 11 years ago
|
|
|
9aa9326a
|
Delete .Rapp.history
|
thomasKuilman <t****n@n****l>
|
about 11 years ago
|
|
|
2190a3fb
|
Prepare git-svn bridge for Bioconductor syncing
|
Thomas Kuilman <t****n@n****l>
|
about 11 years ago
|
|
|
dee61d04
|
Update list of articles using CopywriteR
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
55902e23
|
Updated NAMESPACE
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
abd5fae4
|
Finalized Bioconductor version
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
586974f1
|
Minor bug removal
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
be0dc004
|
Update to vignette and README; include test for unsorted bams
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
de2546f3
|
Bug fix EH
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
4e456ecb
|
Bug removal
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
46e3b065
|
Update in dependencies
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
4492ac51
|
Bioconductor resubmission 1.99.2
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
ac6be35e
|
Update to README
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
6a9a709c
|
Bioconductor submission 1.99.1
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
2c5a95f2
|
Changes to README
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
86748563
|
Added CopywriteR reference and 'cited by' to README III
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
36767cd9
|
Added CopywriteR reference and 'cited by' to README II
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
69149b3f
|
Added CopywriteR reference and 'cited by' to README
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
818a0ed7
|
Updated README
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
0507287f
|
Removed bug related to prefix to chromosome names
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
6801a829
|
Bioconductor submission II
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
047e7c06
|
Added quick start guide to README II
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
a053f194
|
Added quick start guide to README
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
6172926d
|
Update README X
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
63fcc944
|
Update README VIII
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
390d867c
|
Update README VII
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
2def4e5b
|
Update README VI
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
a112ed93
|
Update README V
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
b72fd80a
|
Update README IV
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
d3a315bd
|
Update README III
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
08b871b0
|
Update README II
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
3dfec4d2
|
Update README I
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
433518c3
|
Finalized Bioconductor resubmission
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
0e46545d
|
Pre-submission version
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
39dab46a
|
Updated preCopywriteR function
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
fc842514
|
Include data folder of package in git
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
690c6e3f
|
Implemented BiocParallel and removed with / within calls
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
05561a13
|
Provide output naturally sorted
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
123573b2
|
Bug fixes RB II
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
cf2bf835
|
Bug fix RB
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
650b2d66
|
Updated todo list
|
Thomas Kuilman <t****n@n****l>
|
over 11 years ago
|
|
|
24df29f5
|
Delete .DS_Store
|
PeeperLab <o****n@n****l>
|
over 11 years ago
|
|
|
44b2e304
|
Delete .Rapp.history
|
PeeperLab <o****n@n****l>
|
over 11 years ago
|
|