GitHub / MerrimanLab/selectionTools / commits
| SHA | Message | Author | Date | Stats |
|---|---|---|---|---|
| 761ace7c | Update README.md |
murraycadzow <m****w@o****z>
Committed by: GitHub <n****y@g****m> |
over 3 years ago | |
| b2f49c6f | merge Merge pull request #23 from fdchevalier/bug_indent |
murraycadzow <m****w@o****z>
Committed by: GitHub <n****y@g****m> |
about 9 years ago | |
| d9f89901 | run_pipeline.py - Wrong indentation | Frédéric Chevalier <f****l@t****g> | about 9 years ago | |
| eb4b3232 | Delete selection_pipeline.log |
murraycadzow <m****w@o****z>
Committed by: GitHub <n****y@g****m> |
over 9 years ago | |
| f63db2cb | Rename docker_howto.txt to README.md | James Boocock <s****1@g****m> | over 10 years ago | |
| 1dcde50b | Update install.sh | James Boocock <s****1@g****m> | over 10 years ago | |
| 5bd3935e | Update README.md | murraycadzow <m****w@o****z> | almost 11 years ago | |
| 317157e7 | Update README.md | murraycadzow <m****w@o****z> | almost 11 years ago | |
| d0d1a231 | Update README.md | murraycadzow <m****w@o****z> | almost 11 years ago | |
| f2ebf3bf | Update _version.py | murraycadzow <m****w@o****z> | almost 11 years ago | |
| 01c87f29 | Update aa_annotate.py | murraycadzow <m****w@o****z> | almost 11 years ago | |
| 87011465 | Removed call to cleanup function | James Boocock <j****k@o****z> | almost 11 years ago | |
| 0ebe5adb | updated to mention dev branch | murraycadzow <m****w@o****z> | about 11 years ago | |
| 61df5016 | Update README.md | murraycadzow <m****w@o****z> | about 11 years ago | |
| 79d0e2ad | cleaned up from merge with selectionTools1.1 | murraycadzow <m****w@o****z> | about 11 years ago | |
| 5734431b | merge merged docker files | murraycadzow <m****w@o****z> | about 11 years ago | |
| 4b47f2ec | fixing versioning | Murray Cadzow <m****w@o****z> | about 11 years ago | |
| 563e8c48 | fixing versioning | Murray Cadzow <m****w@o****z> | about 11 years ago | |
| 9e12f583 | fixing versioning | Murray Cadzow <m****w@o****z> | about 11 years ago | |
| 2f670b79 | fixing versioning | Murray Cadzow <m****w@o****z> | about 11 years ago | |
| 78153053 | fixed syntax | Murray Cadzow <m****w@o****z> | about 11 years ago | |
| 380da1c1 | changed to if from assertion | Murray Cadzow <m****w@o****z> | about 11 years ago | |
| ac6aaf8f | fixed syntax | Murray Cadzow <m****w@o****z> | about 11 years ago | |
| ab04a5c5 | fixed syntax | Murray Cadzow <m****w@o****z> | about 11 years ago | |
| 88164c98 | mv to _version.py | Murray Cadzow <m****w@o****z> | about 11 years ago | |
| e5ea1243 | merge merged | Murray Cadzow <m****w@o****z> | about 11 years ago | |
| 35c1b678 | removed random files | Murray Cadzow <m****w@o****z> | about 11 years ago | |
| 677ba89a | added version info | Murray Cadzow <m****w@o****z> | about 11 years ago | |
| 938e722e | Update setup.py | murraycadzow <m****w@o****z> | about 11 years ago | |
| 1efc6087 | Update version.py | murraycadzow <m****w@o****z> | about 11 years ago | |
| 758d52e5 | Update standard_run.py | murraycadzow <m****w@o****z> | about 11 years ago | |
| edebb7bd | Update run_pipeline.py | murraycadzow <m****w@o****z> | about 11 years ago | |
| 7355470c | Update install.sh | murraycadzow <m****w@o****z> | about 11 years ago | |
| 3dda136e | Update docker_howto.txt | murraycadzow <m****w@o****z> | over 11 years ago | |
| 878e3517 | Update setup.py | James Boocock <s****1@g****m> | over 11 years ago | |
| 166779ed | Delete TODO | James Boocock <s****1@g****m> | over 11 years ago | |
| cd5db6fa | dockerfile to use for selectionTools1.1 | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| f779164a | Update docker_howto.txt | James Boocock <s****1@g****m> | over 11 years ago | |
| 4c2e6e71 | Update README.md | murraycadzow <m****w@o****z> | over 11 years ago | |
| 4c134c74 | created howto and build file for creating a docker image with selectionTools | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| a5dd3b91 | Update README.md | murraycadzow <m****w@o****z> | over 11 years ago | |
| 5ce7928d | Update README.md | murraycadzow <m****w@o****z> | over 11 years ago | |
| fb00117e | improved and replicates old results | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| d3c8b8b7 | fixed bug | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| c1b4a440 | merge Merge branch 'selectionTools1.1' of github.com:smilefreak/selectionTools into... | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| 039fd95b | improved general code and added extra comments/documentation | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| 4c78f502 | modified to include snp name in output of map | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| bf28bba5 | merge Merge pull request #11 from gitter-badger/gitter-badge | James Boocock <s****1@g****m> | over 11 years ago | |
| dc349edf | Added Gitter badge | The Gitter Badger <b****r@g****m> | over 11 years ago | |
| 9ba5ae4e | merge merged documentation | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| b7582179 | rewrote to use dictionaries and performed minor testing for correct results | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| 8d9f0efc | completed TODO list and made nicer | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| fcad9083 | updated documetation to include FST < 0 info | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| 501894e3 | merge Merge pull request #9 from dalloliogm/master | murraycadzow <m****w@o****z> | over 11 years ago | |
| 3e5c6aeb | merge updated pdf | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| 9a01401c | updated documentation to reflect negative fst should be changed to 0 | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| cedd120f | updated to use phase3 reference | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| 743b0b35 | DOCS: some minor corrections | Giovanni DallOlio <d****m@g****m> | over 11 years ago | |
| 5318476d | DOCS: minor clarification on the population file | Giovanni DallOlio <d****m@g****m> | over 11 years ago | |
| d9b66674 | NOT BUG TESTED - script to calculate ka/ks from snpeff annotation on vcf file | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| 1ff9eaf1 | Update README.md | smilefreak <s****1@g****m> | over 11 years ago | |
| 964f5521 | changed filtering for indels to be done by vcflib -> vcfsnps instead of vcfto... | Murray Cadzow <m****w@o****z> | over 11 years ago | |
| 8ec5876b | Update README.md | smilefreak <s****1@g****m> | almost 12 years ago | |
| dc42cd2f | Update README.md | smilefreak <s****1@g****m> | almost 12 years ago | |
| 8baf9e3f | removed unneeded files | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| fbd735b1 | updated impute2 to 2.3.1 from 2.3.0 | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| c3da3db0 | removed bifurcation results | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 3725d818 | merge Merge branch 'selectionTools1.1' of github.com:smilefreak/selectionTools into... | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 44951fb2 | fixed LD_LIBRARY_PATH automatic replace | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| b5620bb3 | Update README.md | murraycadzow <m****w@o****z> | almost 12 years ago | |
| c215b0ff | merge Merge branch 'master' of github.com:smilefreak/selectionTools | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 4e9d1c87 | updated documentation with new graphs from Fay and Wu's H to reflect results ... | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 58ff20a5 | updated documentation with new graphs from Fay and Wu's H to reflect results ... | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 5753c967 | Update README.md | James Boocock <s****1@g****m> | almost 12 years ago | |
| dd6ceb04 | updated to latest release of shapeit2 | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| a2d6ae22 | changed so that for vcf file it creates files in the working directory | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 6b0006b3 | fixed .haplotype error | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 674fadd8 | fixed error | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| a5f1a8b5 | added .haplotypes for impute | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 1cb8cacc | fixed indentation | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| b757d40e | fixed indentation | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 4a5af147 | merge Merge branch 'master' of github.com:smilefreak/selectionTools into selectionT... | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| e6e38442 | merge removed load_leveler_utilities.py | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 745a732a | Fixed persistent bug in haps_to_hapmap | James Boocock <j****k@o****z> | almost 12 years ago | |
| 4b463c3d | Made some major changse to run_pipeline | James Boocock <j****k@o****z> | almost 12 years ago | |
| 3bf777e9 | Fixed pipeline to remove triallelic sites. | James Boocock <j****k@o****z> | almost 12 years ago | |
| 38fdba1f | Addede triallelic filter for hap_filter | James Boocock <j****k@o****z> | almost 12 years ago | |
| cbaae55a | Correct Standard run error | James Boocock <j****k@o****z> | almost 12 years ago | |
| 2fbcf92e | removed RData file for bifurcation | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 8fec0715 | Readded haplohh | James Boocock <j****k@o****z> | almost 12 years ago | |
| 9518a4cb | merge Merge branch 'master' of github.com:smilefreak/selectionTools | James Boocock <j****k@o****z> | almost 12 years ago | |
| 5c8d5beb | Changed StandardRun so that it now correctly fail when it discovers | James Boocock <j****k@o****z> | almost 12 years ago | |
| b8bb0840 | updated to reflect no longer create the RData file of neutral_res in multicore | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 82c94bcd | merge Merge pull request #6 from smilefreak/change_daf | murraycadzow <m****w@o****z> | almost 12 years ago | |
| 2010d471 | included daf | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 7cf5a493 | merge Merge branch 'change_daf' of github.com:smilefreak/MerrimanSelectionPipeline ... | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| d71ba4d5 | merge Merge branch 'master', remote branch 'origin' into nesi | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| a778ace1 | made generic | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 9035f60f | added creation of maf and daf statistics into a separate file for later use | Murray Cadzow <m****w@o****z> | almost 12 years ago | |
| 5bc008ff | Fixed problem with haps_interpolate | James Boocock <j****k@o****z> | almost 12 years ago |