GitHub / GINsim/GINsim-python / commits
| SHA | Message | Author | Date | Stats |
|---|---|---|---|---|
| bef906cb | do not fail when ipython but not ipylab | Loïc Paulevé <l****e@l****r> | 5 months ago | |
| 02b1a9d2 | fix import when no ipylab is installed | Loïc Paulevé <l****e@l****r> | 8 months ago | |
| 2411bb06 | conda build | Loïc Paulevé <l****e@l****r> | 11 months ago | |
| 62fef45e | useless global | Loïc Paulevé <l****e@l****r> | 11 months ago | |
| b17f0a1a | fix checking workflow | Loïc Paulevé <l****e@l****r> | 11 months ago | |
| b53abc55 | fix checking workflow | Loïc Paulevé <l****e@l****r> | 11 months ago | |
| b5ad71a0 | colomoto-jupyter version requirement | Loïc Paulevé <l****e@l****r> | 11 months ago | |
| 3fc7c857 | simplify jupyter setup | Loïc Paulevé <l****e@l****r> | 11 months ago | |
| a46cd2a6 | use new implementation of jupyter_setup based on ipylab package. |
Gerald Point <g****t@l****r>
Committed by: Loïc Paulevé <l****e@l****r> |
about 1 year ago | |
| 3e042b50 | fix conda workflow | Loïc Paulevé <l****e@l****r> | almost 2 years ago | |
| 69af0ff5 | Fix conversion to pyboolnet primes |
Vincent Noël <v****l@c****r>
Committed by: Loïc Paulevé <l****e@l****r> |
almost 2 years ago | |
| 1022f4e6 | Ensure PATH is properly configured (#8) | Loïc Paulevé <l****e@e****g> | about 5 years ago | |
| 5c180e6c | include ginsim_setup in the pypi package | Loïc Paulevé <l****e@e****g> | about 5 years ago | |
| 7427050a | Do not call removed methods in the NuSMV API. | Aurelien Naldi <a****i@g****m> | over 5 years ago | |
| 15859e79 | Add to_booleannet functions | Aurelien Naldi <a****i@g****m> | over 5 years ago | |
| 8102b485 | Add to_pyboolnet conversion methods to GINsim and bioLQM API | Aurelien Naldi <a****i@g****m> | over 5 years ago | |
| ee6b88e9 | update conda recipe | Loïc Paulevé <l****e@e****g> | about 6 years ago | |
| 4f6adfdd | fix conda recipe | Loïc Paulevé <l****e@e****g> | about 6 years ago | |
| f31d831a | Also fix the error message | Aurelien Naldi <a****i@g****m> | about 6 years ago | |
| 9fdeeb7c | Merge the svg_display parameter into show | Aurelien Naldi <a****i@g****m> | about 6 years ago | |
| 9d3a6ec5 | ensure colomoto_jupyter is recent enough | Loïc Paulevé <l****e@e****g> | about 6 years ago | |
| 8a05b1d9 | show: add svg_display parameter (img or inline) | Loïc Paulevé <l****e@e****g> | about 6 years ago | |
| 9355061b | display SVG as inline <img> | Loïc Paulevé <l****e@e****g> | about 6 years ago | |
| 3ac25f0d | remove debug | Loïc Paulevé <l****e@e****g> | about 6 years ago | |
| ed69bbb3 | show: auto scaling feature; switch to svg by default | Loïc Paulevé <l****e@e****g> | about 6 years ago | |
| 51e1d3c7 | Add a hidden variable to select the default image format | Aurelien Naldi <a****i@g****m> | about 6 years ago | |
| 421e3e8c | Reindex numpy series before mapping them to a model | Aurelien Naldi <a****i@g****m> | about 6 years ago | |
| f9513249 | small UI improvement with IPython | Loïc Paulevé <l****e@e****g> | about 6 years ago | |
| 1783837d | Expose the show function outside of jupyter. | Aurelien Naldi <a****i@g****m> | about 6 years ago | |
| 11e513de | Merge show_svg into show. | Aurelien Naldi <a****i@g****m> | about 6 years ago | |
| e08ee19f | Support SVG export and inline view in the notebook | Aurelien Naldi <a****i@g****m> | over 6 years ago | |
| 7e607101 | to_biolqm: simpler ensure_boolean | Loïc Paulevé <l****e@e****g> | over 6 years ago | |
| 2456efbf | ginsim: missing name | Loïc Paulevé <l****e@e****g> | over 6 years ago | |
| 8b026069 | to_minibn: add ensure_boolean parameter | Loïc Paulevé <l****e@e****g> | over 6 years ago | |
| ff5ca6c9 | update workflow | Loïc Paulevé <l****e@e****g> | over 6 years ago | |
| f54b25f0 | simplify to_minibn exports by default | Loïc Paulevé <l****e@e****g> | over 6 years ago | |
| daa73230 | release v0.3.9 | Loïc Paulevé <l****e@e****g> | over 6 years ago | |
| dc72b9ca | add github actions for packaging | Loïc Paulevé <l****e@e****g> | over 6 years ago | |
| afa3088b | change default layout to neato | Loïc Paulevé <l****e@e****g> | over 6 years ago | |
| 77ceb4c6 | adjust default layout method and scalings | Loïc Paulevé <l****e@e****g> | over 6 years ago | |
| 937b62d2 | biolqm.to_ginsim: automatically sets the layout if missing | Loïc Paulevé <l****e@e****g> | over 6 years ago | |
| 9ec75b8c | add biolqm.influence_graph and biolqm.autolayout methods | Loïc Paulevé <l****e@e****g> | over 6 years ago | |
| d2a1b182 | Load an external layout in a bioLQM model and transfer it to GINsim | Aurelien Naldi <a****i@g****m> | over 6 years ago | |
| 84df9ba9 | Expose custom styling API | Aurelien Naldi <a****i@g****m> | over 6 years ago | |
| 0829d2c7 | v0.3.8 | Loïc Paulevé <l****e@e****g> | almost 7 years ago | |
| c7ce6b51 | add ginsim.is_ginsim_object | Loïc Paulevé <l****e@e****g> | almost 7 years ago | |
| 866cb18f | add biolqm.is_biolqm_object(obj) | Loïc Paulevé <l****e@e****g> | almost 7 years ago | |
| d875bc7d | biolqm: add menu for .sanitize | Loïc Paulevé <l****e@e****g> | almost 7 years ago | |
| e429c79b | v0.3.7 | Loïc Paulevé <l****e@e****g> | about 7 years ago | |
| 4a7f9813 | .load: check for success | Loïc Paulevé <l****e@e****g> | about 7 years ago | |
| 647d737f | biolqm.save: exception if failure; returns filename | Loïc Paulevé <l****e@e****g> | about 7 years ago | |
| b23dab69 | v0.3.6 | Loïc Paulevé <l****e@e****g> | about 7 years ago | |
| 6dbdb887 | fix biolqm/export menu entries | Loïc Paulevé <l****e@e****g> | over 7 years ago | |
| eebbebbc | merge Merge pull request #3 from vincent-noel/get_network_image |
Aurélien Naldi <a****i@g****m>
Committed by: GitHub <n****y@g****m> |
over 7 years ago | |
| 74559d6e | Create methods for tool aliases as well, adapt dataframe conversion to trapsp... | Aurelien Naldi <a****i@g****m> | over 7 years ago | |
| fc5b9446 | release v0.3.5 | Aurelien Naldi <a****i@g****m> | over 7 years ago | |
| c186600d | Add a convenient flag to skip java -> python conversion of tool results. | Aurelien Naldi <a****i@g****m> | over 7 years ago | |
| bf9b00cc | fix installation instruction | Loïc Paulevé <l****e@e****g> | almost 8 years ago | |
| 32d2b2c0 | installation instructions | Loïc Paulevé <l****e@e****g> | almost 8 years ago | |
| 2dcc389e | release v0.3.4 | Loïc Paulevé <l****e@e****g> | almost 8 years ago | |
| eb7e5bee | fix colomoto_import_tool usage | Loïc Paulevé <l****e@e****g> | almost 8 years ago | |
| 70069069 | ginsim_setup: add clingo | Loïc Paulevé <l****e@e****g> | almost 8 years ago | |
| e2aea9b1 | enable installatin of GINsim outside conda (python -m ginsim_setup) | Loïc Paulevé <l****e@e****g> | almost 8 years ago | |
| de4b883b | Added function to get network image as png |
vincent <c****t@v****r>
Committed by: Vincent Noël <c****t@v****r> |
almost 8 years ago | |
| 8c8c82a1 | update to 0.3.3 | Aurelien Naldi <a****i@g****m> | almost 8 years ago | |
| 9790eed8 | Prepare the support of panda DataFrame to represent states, instead of dict a... | Aurelien Naldi <a****i@g****m> | almost 8 years ago | |
| 0a0e251e | More flexible wrapping API, bump version | Aurelien Naldi <a****i@g****m> | almost 8 years ago | |
| 06b0b3aa | Update to follow the internal bioLQM API | Aurelien Naldi <a****i@g****m> | almost 8 years ago | |
| 5b2c4f7a | release v0.3.1 | Aurelien Naldi <a****i@g****m> | about 8 years ago | |
| 87e98a71 | biolqm: add to_minibn function | Loïc Paulevé <l****e@e****g> | about 8 years ago | |
| a3935a41 | release 0.3.0 | Aurelien Naldi <a****i@g****m> | over 8 years ago | |
| 5cf60abd | also convert random walk output | Aurelien Naldi <a****i@g****m> | over 8 years ago | |
| 08ccabb4 | wrap the simulation iterator into a python iterator | Aurelien Naldi <a****i@g****m> | over 8 years ago | |
| 031cbdb7 | + biolqm.to_ginsim function | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| 4e30fd47 | add toolbars for bioLQM and GINsim | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| ade7b2a3 | release v0.2.95 | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| b37c16a7 | adjust API to latest biolqm | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| 0ceb8f35 | menu (close issue #1) | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| 6d645bcd | fix prime import of biolqm | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| 68fdb1e8 | Automatic conversion of lists of stable states and trapspaces | Aurelien Naldi <a****i@g****m> | over 8 years ago | |
| e8c05e8d | Fix menu entry |
Loïc Paulevé <l****e@e****g>
Committed by: GitHub <n****y@g****m> |
over 8 years ago | |
| 3366e976 | Convert states from GINsim's array to python dicts | Aurelien Naldi <a****i@g****m> | over 8 years ago | |
| a86c23cc | Release v0.2.94 | Aurelien Naldi <a****i@g****m> | over 8 years ago | |
| ec21de0a | Tweak automatic startup of biolqm API wrapper | Aurelien Naldi <a****i@g****m> | over 8 years ago | |
| 56ac6a79 | Add dynamic wrappers for bioLQM modifiers and tool API | Aurelien Naldi <a****i@g****m> | over 8 years ago | |
| 84153a83 | release v0.2.93 | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| 5d2ac74d | follow pyMaBoSS API changes | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| af87e542 | update menu | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| c6d818f5 | follow pyMaBoSS API changes | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| c653ff9b | release 0.2.92 | Aurelien Naldi <a****i@g****m> | over 8 years ago | |
| 1fa62871 | Update show API, bump version | Aurelien Naldi <a****i@g****m> | over 8 years ago | |
| 7878e431 | use 'load' for the python entry point to provide amore consistent API | Aurelien Naldi <a****i@g****m> | over 8 years ago | |
| a6412a81 | Add a shortcut to convert from ginsim to pint | Aurelien Naldi <a****i@g****m> | over 8 years ago | |
| 216ac750 | release 0.2.91 | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| c44d4484 | follow pymaboss API change | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| 597e8030 | follow pymaboss API change | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| 8c276628 | re-order import (fix ginsim.upload) | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| 7a8ce950 | NuSMV conversion | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| 82174d11 | enable access to java gateway through ginsim.japi.java | Loïc Paulevé <l****e@e****g> | over 8 years ago | |
| 77094491 | fix conda recipe | Loïc Paulevé <l****e@e****g> | over 8 years ago |