GitHub / ComputationalCryoEM/ASPIRE-Python / commits
| SHA | Message | Author | Date | Stats |
|---|---|---|---|---|
| 64ad0dd6 | Update Docs |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
about 2 months ago | |
| dd5a87ac | CLMatrixOrient3D -> CLOrient3D |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
about 2 months ago | |
| b9357446 | CLOrient3D -> Orient3D |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
about 2 months ago | |
| 4997e8de | Bump version: 0.14.2 → 0.14.3 |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
about 2 months ago | |
| b9c659a7 | doc edit |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
about 2 months ago | |
| 2e23c571 | rollback cufinufft 2.5.0 for now |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
2 months ago | |
| 8d679075 | try to get osx arm on latest finufft |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 8bda95c0 | make image asymmetric |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 1e600057 | 2.5.0 still having trouble on darwin platform |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 710634e6 | Bump finufft to 2.5.0 |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| cbb79e68 | tox |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 29433c2c | remove unused scipy face from test_starfileio.py |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| c1dbfbe8 | remove face from test_image.py |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| f6633ecb | patch the CUDA code for failing CL hist case |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 1ea1acc2 | better handle case where no hist bin is returned from _vote_ij |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| cdb1d34b | update runner workflow to 13x from 12x |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 2a5f33d8 | update doc references to 13x from 12x |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 744b2a80 | update cufinufft to 2.5.0 for 13x line |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 73adbc1f | update package name |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 09cac3f0 | add gpu_13x extension |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 501469f7 | workaround troubled cupy 12x package |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 97df2906 | env win64 |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 4644a7f0 | update tox |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| b932fa09 | update pyproject.toml |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| caf8fd89 | update accelerated envs |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 6033149c | update README |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| f2bf4fb8 | update docs |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 7abe4b04 | bump workflow |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 6ae81406 | style cleanup |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 815b29a0 | dct default nworkers patch |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| a903cd4f | add rotations/shifts attributes to diagram |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| e47007c7 | use attribute assignment in subclass example |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 25b8d98d | reword paramter description |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 40ca36bd | reword SDP description |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| af694fab | remove self._mu reference |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 3af3450a | add note and links to GPU install instructions |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 9d306334 | use rots/shifts attributes in example |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 8ab342b5 | remove class avg source from workflow |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 43191252 | Cleanup old batch sizes |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 3bf6934f | update algo descriptions |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
3 months ago | |
| 8f9df2f5 | more doc page updates |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| cb09fcb9 | gallery edits |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 8644c32b | remove args from old init |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 428888ed | move params to correct init |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 5f85ea6a | add orientation estimation doc page |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| f7c71212 | take out the mod code and replace with simpler branch |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 85c9911f | fix filter indexing bug in micrograph sim source |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 52e2e0e7 | Minor cleanup |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 39d142ca | new black style update |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| dafe3a80 | add .h to project manifest |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| b51e6250 | minor rename to header and include guard |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 2a7262e2 | Change to non-legacy preproc and 32 nbors |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 1f533ee5 | revert clamtrix logging flag. Fix cause of excessive logs |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 35b4c610 | sign_times_v docs |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| fb49f34d | update comment |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 8fc361df | np.conj(A) -> A.conj() |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 53cddfa1 | newaxis -> None |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 3aa09ca8 | style cleanup |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| 7b10ecf9 | Initial add 11618 |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
4 months ago | |
| ec235ae7 | Match matlab shift_step default, 0.5 |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 2009ac3f | Add condition number for diag |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 9f97b758 | add J_weighting arg to classes using JSync |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 1286e177 | normalize_background |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 23e55503 | pin confuse to 2.1.0 |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 0ca24a92 | one more small optimization, 10% speed up |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| ff4b779f | tox |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 38b688d0 | update 10081 gallery experiment |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| c0ec488e | pbars for long ops |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 997c6493 | vectorize _estimate_inplane_rotations |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 325cd75d | tox |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 52a3b65f | remove migrated Jsync methods from sync3n |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 22c5ac1c | log using existing clmatrix only once |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 3a0eee17 | update sync3n_cupy test |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| ebd00ac3 | add cuda files |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 914a1cff | separate cuda files |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| c6f55d49 | Make np `where` args explicit with `out=`. |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 9561b0f0 | migrate optimized J_sync methods to JSync module |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 0d4b8d08 | disable_gpu arg |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 61cc438b | CLMatrix --> CLMatrixOrient3D |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| a34ef846 | remove unused args |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 158426d3 | array shape patch for scipy 1.17.0 |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 500b42dd | Patch the direct covar est solver. |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| cb2f317d | tox |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| 1e4bc1d8 | basic testing for CLMatrix class |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| cbec7d1e | remove self.build_clmatrix |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
5 months ago | |
| ba8ec6a1 | Bump version: 0.14.1 → 0.14.2 |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| f0892e39 | float64 amplitude code comment |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| c50d9fee | Add M+theta arg error and test |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| acdc45e9 | tox doesn't like ## |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| 85f4fbde | add tests for additional unsupported input cases |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| 127704dd | actually fix the bug this time |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| 760e4ee6 | macos 14 |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| 43fae92f | update macos runner to 15 |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| 531a01a1 | override scikit inverse_transform to allow for complex values |
Josh Carmichael <c****l@p****u>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| 6a36a379 | attempt to fix theta bcast bug |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| 065fa500 | more cleanup |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| 9282b901 | cleanup |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| 93363deb | comment cleanup |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| 05837b43 | more analytic image rot test |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago | |
| 1e02025e | rm unused import |
Garrett Wright <g****g@g****m>
Committed by: Garrett Wright <4****g@u****m> |
6 months ago |