GitHub / BioinfoMachineLearning/DeepInteract / commits
| SHA | Message | Author | Date | Stats |
|---|---|---|---|---|
| c78d2054 | Update environment.yml |
Alex Morehead <a****d@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| 807b64a0 | Update Zenodo links |
Alex Morehead <a****d@g****m>
Committed by: GitHub <n****y@g****m> |
almost 4 years ago | |
| 9e35782e | Update the train/val/test_step to parse input batches from a single input list | Alex Morehead <a****d@g****m> | about 4 years ago | |
| f18f576d | Update README.md |
Alex Morehead <a****d@g****m>
Committed by: GitHub <n****y@g****m> |
about 4 years ago | |
| 3d8686a6 | Update DeepInteract overview figure with small revisions | Alex Morehead <a****d@g****m> | about 4 years ago | |
| 23009fc0 | Update README.md | Alex Morehead <a****d@g****m> | over 4 years ago | |
| a9d639d3 | Update to version 1.1.0 of DeepInteract and update Zenodo links | Alex Morehead <a****d@g****m> | over 4 years ago | |
| d0781de9 | Add DB5 dataset support to pipeline | Alex Morehead <a****d@g****m> | over 4 years ago | |
| bfefd172 | Update README | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 03ab9cf4 | Add new release details | Alex Morehead <a****d@g****m> | over 4 years ago | |
| a1779ad6 | Add correction to edge weights definition | Alex Morehead <a****d@g****m> | over 4 years ago | |
| bef7eeab | Update README wording | Alex Morehead <a****d@g****m> | over 4 years ago | |
| f9c2ad16 | Update Zenodo links w.r.t. new dataset version | Alex Morehead <a****d@g****m> | over 4 years ago | |
| fcf7327b | Update figures |
Alex Morehead <a****d@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 3d8c55ae | Include top-k recall metrics in training pipeline, and bump version | Alex Morehead <a****d@g****m> | over 4 years ago | |
| e89d9467 | Add multimer support in feature postprocessing and update variable name | Alex Morehead <a****d@g****m> | over 4 years ago | |
| d246f867 | Halt execution of the inference pipeline if either input PDB is not found | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 4824011a | Install missing chain IDs into input PDB files | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 6d885b4d | Restore original chain IDs to EVCoupling input chain DataFrames | Alex Morehead <a****d@g****m> | over 4 years ago | |
| f301dcf0 | Ensure PDB codes match for input pairs | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 83464c5e | Resolve potential misordering of PSAIA feature DF filenames | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 4df3315e | Add BioPandas to facilitate recovery of any missing PDB chain IDs during infe... | Alex Morehead <a****d@g****m> | over 4 years ago | |
| f77978b7 | Remove the deprecated use_dgl argument and its accompanying logic | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 1df23008 | Fix 'complex.dill file path not found' error | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 48f39633 | merge Merge pull request #5 from BioinfoMachineLearning/develop |
Alex Morehead <a****d@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 17784a7a | Simplify logging for feature imputation script | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 51ccf61c | Add more logging to feature imputation function | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 3403dee2 | merge Merge branch 'develop' of https://github.com/BioinfoMachineLearning/DeepInter... | Alex Morehead <a****d@g****m> | over 4 years ago | |
| a639d247 | Fix pair filenames missing l/r_u substring not being processed, and also fix ... | Alex Morehead <a****d@g****m> | over 4 years ago | |
| cad4ec88 | merge Merge pull request #4 from BioinfoMachineLearning/develop |
Alex Morehead <a****d@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 2b531e82 | Simplify filename matching during final stages of inference data processing | Alex Morehead <a****d@g****m> | over 4 years ago | |
| dbac0f95 | Match produced filenames with input filenames using their PDB codes | Alex Morehead <a****d@g****m> | over 4 years ago | |
| d52304bd | merge Merge pull request #3 from BioinfoMachineLearning/develop |
Alex Morehead <a****d@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| edd23fdb | Scan directory of postprocessed pairs to determine how to construct input pai... | Alex Morehead <a****d@g****m> | over 4 years ago | |
| e62b87ab | Add logic to construct filepaths for already-postprocessed input pairs during... | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 20ea17cb | Update README.md |
Alex Morehead <a****d@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 602cdb72 | Update PyPI package version | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 34cee688 | Update setup and images | Alex Morehead <a****d@g****m> | over 4 years ago | |
| ce5e86fd | Update arXiv link | Alex Morehead <a****d@g****m> | over 4 years ago | |
| c8993e9e | Update README | Alex Morehead <a****d@g****m> | over 4 years ago | |
| e5220346 | Update compatible GNN modules' documentation | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 40bfab17 | Update dataset class URLs | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 46fae56a | Allow user to choose how many GPUs to use for inference | Alex Morehead <a****d@g****m> | over 4 years ago | |
| aa043e11 | Remove extra logging | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 57ddba25 | Update .gitignore | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 55cd9de6 | Update README for PSAIA config file's customization of filepaths | Alex Morehead <a****d@g****m> | over 4 years ago | |
| eba6bcb2 | Update README | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 0ea828fe | Update README | Alex Morehead <a****d@g****m> | over 4 years ago | |
| cc75463d | Update README | Alex Morehead <a****d@g****m> | over 4 years ago | |
| b817f2f6 | Update training, validation, and testing steps to match the shared_step() des... | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 70c3e492 | Change default number of GPUs for training to 1 | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 79bb2730 | Fix README instructions' syntax and otherwise update in batch | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 76469567 | Update README | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 69f1ce7c | Delete .gitignore |
Alex Morehead <a****d@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| 7de16ef8 | Add files in batch for public release | Alex Morehead <a****d@g****m> | over 4 years ago | |
| 3b89c552 | Update README | Alex Morehead <a****d@g****m> | over 4 years ago | |
| e47a6cfd | Update README.md |
Alex Morehead <a****d@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago | |
| be58a0ac | Initial commit |
Jianlin Cheng <j****g@g****m>
Committed by: GitHub <n****y@g****m> |
over 4 years ago |