teamtomo/starfile

STAR file I/O in Python

Commits: 152

napari/napari-animation

A napari plugin for making animations

Commits: 123

gutsche-lab/blik

Commits: 119

brisvag/blik

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

Commits: 119

brisvag/starfile

Commits: 117

euanpyle/relion4_tomo_robot

Commits: 77

3dem/relion

Commits: 63

funkelab/finn

Commits: 57

napari-threedee/napari-threedee

Commits: 57

napari/napari

napari: a fast, interactive, multi-dimensional image viewer for python

Commits: 57

andrewannex/napari

Commits: 57

chris-n-k/napari

Commits: 57

brisvag/napari

Commits: 57

teamtomo/yet-another-imod-wrapper

Commits: 57

teamtomo/torch-cubic-spline-grids

Commits: 49

alisterburt/dynamo2m

Commits: 44

EuanPyle/relion2dynamo

Commits: 44

alisterburt/napari-workshops

A JupyterBook site for napari workshop materials

Commits: 43

brisvag/fidder

Commits: 34

jni/napari-repo-test

Commits: 31

teamtomo/lil-aretomo

Commits: 28

napari-tomoslice/napari-tomoslice

tomogram visualisation and annotation in napari

Commits: 27

alisterburt/napari-tomoslice

Commits: 27

teamtomo/mdocfile

Commits: 26

brisvag/eulerangles

Commits: 25

teamtomo/teamtomo

Commits: 25

teamtomo/dynamotable

Commits: 22

alisterburt/mdocspoofer

Commits: 21

alisterburt/napari-subboxer

Commits: 19

teamtomo/torch-image-interpolation

Commits: 19

teamtomo/cryotypes

Super-simple data structures for cryo-electron tomography data

Commits: 16

rosalindfranklininstitute/parakeet

Commits: 14

alisterburt/emanjson2imodxf

Commits: 13

alisterburt/napari-mrcfile-reader

Commits: 12

morphometrics/morphosamplers

Commits: 11

brisvag/vispy

Commits: 11

swe-gym-raw/vispy__vispy

Commits: 11

brisvag/dynamotable

Commits: 11

vispy/vispy

Main repository for Vispy

Commits: 11

teamtomo/torch-fourier-slice

Commits: 10

teamtomo/torch-fourier-shift

Commits: 10

teamtomo/torch-motion-correction

Commits: 10

alisterburt/mojo-cryoem-projection

with jeff

Commits: 9

teamtomo/torch-grid-utils

Commits: 9

bforsbe/OccuPy

Commits: 9

rei289/vispy

Commits: 8

teamtomo/torch-fourier-rescale

Commits: 8

teamtomo/torch-subpixel-crop

Crop 2D/3D images with subpixel precision in PyTorch

Commits: 7

warpem/warp-tm-vis

Commits: 6

teamtomo/eerfile

Read electron event representation (EER) files in Python

Commits: 5

teamtomo/membrain-seg

membrane segmentation in 3D for cryo-ET

Commits: 5

teamtomo/teamtomo.github.io

teamtomo.org website

Commits: 5

pyapp-kit/psygnal

Python observer pattern (callback/event system). Modeled after Qt Signals & Slots (but independent of Qt)

Commits: 5

teamtomo/torch-segment-fiducials-2d

Semantic segmentation of gold fiducial markers in cryo-EM images in PyTorch

Commits: 5

tlambert03/psygnal

Commits: 5

alisterburt/mpl_animation

Playing with the matplotlib animation framework

Commits: 4

teamtomo/torch-fourier-shell-correlation

Calculate the Fourier shell correlation in PyTorch

Commits: 4

alisterburt/mrchead

CLI tool for looking at mrc file headers

Commits: 4

teamtomo/cryoeraser

Erase features from cryo-EM images in Python

Commits: 4

the-lay/tiler

Commits: 3

teamtomo/torch-transform-image

Commits: 3

teamtomo/ttmask

Commits: 3

alisterburt/pathlibls

Commits: 3

teamtomo/torch-affine-utils

Commits: 2

ccpem/mrcfile

Commits: 2

alisterburt/napari-etdb

Commits: 2

teamtomo/alnfile

Commits: 2

napari/napari-plugin-manager

napari plugin manager to provide a graphical user interface for installing napari plugins.

Commits: 2

teamtomo/torch-tiltxcorr

Commits: 2

alisterburt/tilt-image-excluder

QWidget for napari that enables excluding tilt-images from a tilt-series

Commits: 2

napari/napari-plugin-template

A template repo used to make new napari plugins

Commits: 1

napari/docs

Commits: 1

widgetti/solara

A Pure Python, React-style Framework for Scaling Your Jupyter and Web Apps

Commits: 1

conda-forge/napari-threedee-feedstock

A conda-smithy repository for napari-threedee.

Commits: 1

alisterburt/molstar-embed-simple

testing building an embeddable viewer with molstar

Commits: 1

patrick-kidger/torchcubicspline

Interpolating natural cubic splines. Includes batching, GPU support, support for missing values, evaluating derivatives of the spline, and backpropagation.

Commits: 1

pyapp-kit/app-model

Generic application schema implemented in python.

Commits: 1

pyapp-kit/cmap

Scientific colormaps for python, with only numpy dependency

Commits: 1

jni/skan

Python module to analyse skeleton (thin object) images

Commits: 1

czimaginginstitute/AreTomo2

Commits: 1

napari/cookiecutter-napari-plugin

Cookiecutter for napari plugins

Commits: 1

napari/packaging

Commits: 1

modular/modular

The Modular Platform (includes MAX & Mojo)

Commits: 1

redsun-acquisition/redsun-plugin-template

Template repository for RedSun plugin using copier

Commits: 1